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OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs Kriventseva, Evgenia; Kouznetsov, Dimitri; Tegenfeldt, Fredrik; Manni, Mose; ... Zdobnov, Evgeny 2019
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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs Zdobnov, Evgeny; Tegenfeldt, Fredrik; Kuznetsov, D; Waterhouse, Robert; ... Kriventseva, Evgenia 2017
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BUSCO applications from quality assessments to gene prediction and phylogenomics Waterhouse, Robert; Seppey, Mathieu; Simao Neto, Felipe; Manni, Mose; ... Zdobnov, Evgeny 2017
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OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software Kriventseva, Evgenia; Tegenfeldt, Fredrik; Petty, Tom; Waterhouse, Robert; ... Zdobnov, Evgeny 2015
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs Simao Neto, Felipe; Waterhouse, Robert; Ioannidis, Panagiotis; Kriventseva, Evgenia; Zdobnov, Evgeny 2015
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OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs Waterhouse, Robert; Tegenfeldt, Fredrik; Li, Jia; Zdobnov, Evgeny; Kriventseva, Evgenia 2013
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Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality Simola, Daniel F; Wissler, Lothar; Donahue, Greg; Waterhouse, Robert; ... Zdobnov, Evgeny 2013
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Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi Waterhouse, Robert; Zdobnov, Evgeny; Kriventseva, Evgenia 2011
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OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 Waterhouse, Robert; Zdobnov, Evgeny; Tegenfeldt, Fredrik; Li, Jia; Kriventseva, Evgenia 2011
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Comparative Genome Analysis Waterhouse, Robert; Kriventseva, Evgenia; Zdobnov, Evgeny 2009
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miROrtho: computational survey of microRNA genes Gerlach, Daniel; Kriventseva, Evgenia; Rahman, Nazim; Vejnar, Charles; Zdobnov, Evgeny 2009
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The bovine lactation genome: insights into the evolution of mammalian milk Lemay, Danielle G.; Lynn, David J.; Martin, William F.; Neville, Margaret C.; ... Rijnkels, Monique 2009
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OrthoDB: the hierarchical catalog of eukaryotic orthologs Kriventseva, Evgenia; Rahman, Nazim; Espinosa, Octavio; Zdobnov, Evgeny 2008
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Mapping of small RNAs in the human ENCODE regions Borel, Christelle; Gagnebin, Maryline; Gehrig, Corinne; Kriventseva, Evgenia; ... Antonarakis, Stylianos 2008
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AnoEST: toward A. gambiae functional genomics Kriventseva, Evgenia; Koutsos, Anastasios C; Blass, Claudia; Kafatos, Fotis C; ... Zdobnov, Evgeny 2005
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Interactive InterPro-based comparisons of proteins in whole genomes Kanapin, A; Apweiler, R; Biswas, M; Fleischmann, W; ... Zdobnov, Evgeny 2002
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Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes Apweiler, R; Biswas, M; Fleischmann, W; Kanapin, A; ... Zdobnov, Evgeny 2001
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CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins Kriventseva, Evgenia; Fleischmann, Wolfgang; Zdobnov, Evgeny; Apweiler, Rolf 2001