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Phylogenetic cluster analysis identifies virological and behavioral drivers of HIV transmission in MSM. Bachmann, Nadine; Kusejko, Katharina; Nguyen, Huyen; Chaudron, Sandra E; ... Kouyos, Roger D 2020
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Emergence of drug resistance in the Swiss HIV Cohort Study under potent antiretroviral therapy is observed in socially disadvantaged patients Abela, Irene A; Scherrer, Alexandra U; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F 2020
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Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART. Bachmann, Nadine; von Siebenthal, Chantal; Vongrad, Valentina; Turk, Teja; ... Metzner, Karin J 2019
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A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, noncommunicable diseases, and opportunistic diseases Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra Elisabeth; Nguyen, Huyen Tran; ... Kouyos, Roger D 2019
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Viral diversity based on next-generation sequencing of HIV-1 provides precise estimates of infection recency and time since infection Carlisle, Louisa A; Turk, Teja; Kusejko, Katharina; Metzner, Karin J; ... Kouyos, Roger D 2019
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HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected Nguyen, Huyen Tran; Thorball, Christian W; Fellay, Jacques; Böni, Jürg; ... Kouyos, Roger 2019
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The cumulative impact of harm reduction on the swiss HIV epidemic: cohort study, mathematical model, and phylogenetic analysis Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; ... Kouyos, Roger D 2018
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Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study Kusejko, Katharina; Kadelka, Claus; Marzel, Alex; Battegay, Manuel; ... Kouyos, Roger D 2018
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Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; ... Regoes, Roland R 2018
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Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; ... Bonhoeffer, Sebastian 2018
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Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; ... Trkola, Alexandra 2018
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Determinants of HIV-1 broadly neutralizing antibody induction Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; ... Trkola, Alexandra 2016
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A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; ... Brown, Andrew J Leigh 2016
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Large-scale inference of conjunctive Bayesian networks Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; ... Beerenwinkel, Niko 2016
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Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; ... Günthard, Huldrych F 2016
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Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; ... Kouyos, Roger 2016
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Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; ... Günthard, Huldrych F 2016
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Still Far From 90-90-90: Virologic Outcomes of Children on Antiretroviral Therapy in Nurse-led Clinics in Rural Lesotho Puga, Daniel; Cerutti, Bernard; Molisana, Cheleboi; Bader, Joëlle; ... Labhardt, Niklaus D 2016
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Performance of Risk Charts to Guide Targeted HIV Viral Load Monitoring of ART Cerutti, Bernard; Bader, Joëlle; Ehmer, Jochen; Pfeiffer, Karolin; ... Labhardt, Niklaus D. 2016
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Same day ART initiation versus clinic-based pre-ART assessment and counselling for individuals newly tested HIV-positive during community-based HIV testing in rural Lesotho – a randomized controlled trial (CASCADE trial) Labhardt, Niklaus Daniel; Ringera, Isaac; Lejone, Thabo Ishmael; Masethothi, Phofu; ... Glass, Tracy Renée 2016
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