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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples de Vries, Jutte J C; Brown, Julianne R; Fischer, Nicole; Sidorov, Igor A; ... Claas, Eric C J 2021
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Blood virosphere in febrile Tanzanian children Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; ... Kaiser, Laurent 2021
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Unmasking viral sequences by metagenomic next-generation sequencing in adult human blood samples during steroid-refractory/dependent graft-versus-host disease Zanella, Marie-Céline; Cordey, Samuel; Laubscher, Florian; Docquier, Mylene; ... Vu Cantero, Diem-Lan 2021
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Clinical, virological and immunological features of a mild case of SARS-CoV-2 re-infection Vetter, Pauline; Cordey, Samuel; Schibler, Manuel; Vieux, Laure; ... Kaiser, Laurent 2021
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Puumala Virus Infection in Family, Switzerland Vetter, Pauline; L'Huillier, Arnaud G; Montalbano, Maria F; Pigny, Fiona; ... Schibler, Manuel 2021
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Re: Moore et al., Detection of SARS-CoV-2 within the healthcare environment: a multicentre study conducted during the first wave of the COVID-19 outbreak in England, Journal of Hospital Infection 2020;108:189-196 Robalo Nunes, T.; Zanella, Marie-Céline; Cordey, Samuel; Kaiser, Laurent; Harbarth, Stéphan Juergen 2021
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SARS-CoV-2 Evolution among Oncological Population: In-Depth Virological Analysis of a Clinical Cohort Laubscher, Florian; Cordey, Samuel; Friedlaender, Alex; Schweblin, Cécilia; ... Vu Cantero, Diem-Lan 2021
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Sustained Trichodysplasia Spinulosa Polyomavirus Viremia Illustrating a Primary Disseminated Infection in a Kidney Transplant Recipient Zanella, Marie-Céline; Pastor, Damien; Feltkamp, Mariet C W; Hadaya, Karine; ... Toutous Trellu, Laurence Marie 2021
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Explosive nosocomial outbreak of SARS-CoV-2 in a rehabilitation clinic: the limits of genomics for outbreak reconstruction Abbas, Mohamed; Robalo Nunes, T; Cori, A; Cordey, Samuel; ... Harbarth, Stéphan Juergen 2021
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Virosaurus A Reference to Explore and Capture Virus Genetic Diversity Gleizes, Anne; Laubscher, Florian; Guex, Nicolas; Iseli, Christian; ... Le Mercier, Philippe 2020
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Beyond cytomegalovirus and Epstein-Barr Virus: a review of viruses composing the blood virome of solid organ transplant and hematopoietic stem cell transplant recipients Zanella, Marie-Céline; Cordey, Samuel; Kaiser, Laurent 2020
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Daily viral kinetics and innate and adaptive immune response assessment in COVID-19: a case series Vetter, Pauline; Eberhardt, Christiane Sigrid; Meyer, Benjamin; Martinez Murillo, Paola Andréa; ... Eckerle, Isabella Anne 2020
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Unbiased metagenomic next-generation sequencing of blood from hospitalized febrile children in Gabon Fernandes, José Francisco; Laubscher, Florian; Held, Jana; Eckerle, Isabella Anne; ... Cordey, Samuel 2020
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Enterovirus, parechovirus, adenovirus and herpes virus type 6 viraemia in fever without source L'Huillier, Arnaud; Mardegan, Chiara; Cordey, Samuel; Luterbacher, Fanny; ... Galetto-Lacour, Annik 2020
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High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis, and meningitis. A narrative review and clinical appraisal Zanella, Marie-Céline; Lenggenhager, Lauriane; Schrenzel, Jacques; Cordey, Samuel; Kaiser, Laurent 2019
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Viral metagenomics in the clinical realm: lessons learned from a swiss-wide ring trial Junier, Thomas; Huber, M; Schmutz, S; Kufner, V; ... Lebrand, Aitana 2019
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Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes Bose, Michael E; Shrivastava, Susmita; He, Jie; Nelson, Martha I; ... Henrickson, Kelly J 2019
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Nearly complete genome sequence of a novel phlebovirus-like virus detected in a human plasma sample by high-throughput sequencing Laubscher, Florian; Cordey, Samuel; Hartley, Mary-Anne; Vieille, Gaël; ... Kaiser, Laurent 2019
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Detection of dicistroviruses RNA in blood of febrile Tanzanian children Cordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; ... Kaiser, Laurent 2019
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Viral sequences detection by high-throughput sequencing in cerebrospinal fluid of individuals with and without central nervous system disease Schibler, Manuel; Brito, Francisco; Zanella, Marie-Céline; Zdobnov, Evgeny; ... Kaiser, Laurent 2019
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