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OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs Kriventseva, Evgenia; Kouznetsov, Dimitri; Tegenfeldt, Fredrik; Manni, Mose; ... Zdobnov, Evgeny 2019
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Using BUSCO to Assess Insect Genomic Resources Waterhouse, Robert M; Seppey, Mathieu; Simao Neto, Felipe; Zdobnov, Evgeny 2019
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In silico Analysis Suggests Common Appearance of scaRNAs in Type II Systems and Their Association With Bacterial Virulence Guzina, Jelena; Chen, Wei-Hua; Stankovic, Tamara; Djordjevic, Magdalena; ... Djordjevic, Marko 2018
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Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank Brito, Francisco; Cordey, Samuel; Delwart, Eric; Deng, Xutao; ... Preynat-Seauve, Olivier 2018
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Human pegivirus persistence in the human blood virome after allogeneic haematopoietic stem cell transplantation Vu Cantero, Diem-Lan; Cordey, Samuel; Simonetta, Federico; Brito, Francisco; ... Kaiser, Laurent 2018
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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs Zdobnov, Evgeny; Tegenfeldt, Fredrik; Kuznetsov, D; Waterhouse, Robert; ... Kriventseva, Evgenia 2017
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Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders Ioannidis, Panagiotis; Simao Neto, Felipe; Waterhouse, Robert; Manni, Mose; ... Zdobnov, Evgeny 2017
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Understanding key features of bacterial restriction-modification systems through quantitative modeling Rodic, Andjela; Blagojevic, Bojana; Zdobnov, Evgeny; Djordjevic, Magdalena; Djordjevic, Marko 2017
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BUSCO applications from quality assessments to gene prediction and phylogenomics Waterhouse, Robert; Seppey, Mathieu; Simao Neto, Felipe; Manni, Mose; ... Zdobnov, Evgeny 2017
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Scoring Targets of Transcription in Bacteria Rather than Focusing on Individual Binding Sites Djordjevic, Marko; Djordjevic, Magdalena; Zdobnov, Evgeny 2017
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[Bioinformatics analysis of antimicrobial resistance genes and prophages colocalized in human gut metagenomes] Starikova, E V; Prianichnikov, N A; Zdobnov, Evgeny; Govorun, V M 2017
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Propagation of respiratory viruses in human airway epithelia reveals persistent virus-specific signatures Essaidi, Manel; Brito, Francisco; Benaoudia, Sacha; Royston, Lena; ... Tapparel, Caroline 2017
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Metagenomics analysis of red blood cell and fresh-frozen plasma units Lau, Pierre; Cordey, Samuel; Brito, Francisco; Tirefort, Diderik; ... Preynat-Seauve, Olivier 2017
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CEGA - a catalog of conserved elements from genomic alignments Dousse, Aline; Junier, Thomas; Zdobnov, Evgeny 2016
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Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution Hoy, Marjorie A; Waterhouse, Robert; Wu, Ke; Estep, Alden S; ... Richards, Stephen 2016
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The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases Zdobnov, Evgeny 2016
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Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface McKenna, Duane D; Scully, Erin D; Pauchet, Yannick; Hoover, Kelli; ... Zdobnov, Evgeny 2016
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Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology Cordey, Samuel; Brito, Francisco; Vu Cantero, Diem-Lan; Turin, Lara; ... Kaiser, Laurent 2016
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Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection Cordey, Samuel; Vu Cantero, Diem-Lan; Schibler, Manuel; L'Huillier, Arnaud; ... Kaiser, Laurent 2016
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OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software Kriventseva, Evgenia; Tegenfeldt, Fredrik; Petty, Tom; Waterhouse, Robert; ... Zdobnov, Evgeny 2015
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