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Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; ... Regoes, Roland R 2018
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Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; ... Bonhoeffer, Sebastian 2018
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Determinants of HIV-1 broadly neutralizing antibody induction Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; ... Trkola, Alexandra 2016
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A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; ... Brown, Andrew J Leigh 2016
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Large-scale inference of conjunctive Bayesian networks Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; ... Beerenwinkel, Niko 2016
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Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; ... Günthard, Huldrych F 2016
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Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; ... Kouyos, Roger 2016
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Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; ... Günthard, Huldrych F 2016
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Still Far From 90-90-90: Virologic Outcomes of Children on Antiretroviral Therapy in Nurse-led Clinics in Rural Lesotho Puga, Daniel; Cerutti, Bernard; Molisana, Cheleboi; Bader, Joëlle; ... Labhardt, Niklaus D 2016
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Performance of Risk Charts to Guide Targeted HIV Viral Load Monitoring of ART Cerutti, Bernard; Bader, Joëlle; Ehmer, Jochen; Pfeiffer, Karolin; ... Labhardt, Niklaus D. 2016
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Same day ART initiation versus clinic-based pre-ART assessment and counselling for individuals newly tested HIV-positive during community-based HIV testing in rural Lesotho – a randomized controlled trial (CASCADE trial) Labhardt, Niklaus Daniel; Ringera, Isaac; Lejone, Thabo Ishmael; Masethothi, Phofu; ... Glass, Tracy Renée 2016
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Should viral load thresholds be lowered? Labhardt, Niklaus D.; Bader, Joëlle; Lejone, Thabo Ishmael; Ringera, Isaac; ... Klimkait, Thomas 2016
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Alcohol use and depression: link with adherence and viral suppression in adult patients on antiretroviral therapy in rural Lesotho, Southern Africa: a cross-sectional study Cerutti, Bernard; Broers, Barbara; Masetsibi, Motlomelo; Faturiyele, Olatunbosun; ... Labhardt, Niklaus D 2016
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Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; ... Günthard, Huldrych F 2016
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Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds Yang, Wan-Lin; Kouyos, Roger D.; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F. 2015
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Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012 Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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Decreasing Proportion of Recent Infections among Newly Diagnosed HIV-1 Cases in Switzerland, 2008 to 2013 Based on Line-Immunoassay-Based Algorithms Schüpbach, Jörg; Niederhauser, Christoph; Yerly Ferrillo, Sabine; Regenass, Stephan; ... Gebhardt, Martin D 2015
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Treatment-Naive Individuals Are the Major Source of Transmitted HIV-1 Drug Resistance in Men Who Have Sex With Men in the Swiss HIV Cohort Study Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; ... Calmy, Alexandra 2014
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Limited clinical benefit of minority K103N and Y181C-variant detection in addition to routine genotypic resistance testing in antiretroviral therapy-naive patients Metzner, Karin J; Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; ... Günthard, Huldrych F 2014
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Generation of a recombinant Gag virus-like-particle panel for the evaluation of p24 antigen detection by diagnostic HIV tests Vetter, Beatrice N; Orlowski, Vanessa; Fransen, Katrien; Niederhauser, Christoph; ... Schüpbach, Jörg 2014
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Higher risk of incident hepatitis C virus coinfection among men who have sex with men, in whom the HIV genetic bottleneck at transmission was wide Kouyos, Roger D; Rauch, Andri; Braun, Dominique L; Yang, Wan-Lin; ... Günthard, Huldrych F 2014
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The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; ... Calmy, Alexandra 2013
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Adherence as a Predictor of the Development of Class-Specific Resistance Mutations: The Swiss HIV Cohort Study von Wyl, Viktor; Klimkait, Thomas; Yerly Ferrillo, Sabine; Nicca, Dunja; ... Glass, Tracy R 2013
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Higher CNS penetration-effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid Cusini, Alexia; Vernazza, Pietro L; Yerly Ferrillo, Sabine; Decosterd, Laurent A; ... Günthard, Huldyrich F 2013
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Simple Estimation of Incident HIV Infection Rates in Notification Cohorts Based on Window Periods of Algorithms for Evaluation of Line-Immunoassay Result Patterns Schüpbach, Jörg; Gebhardt, Martin D.; Scherrer, Alexandra U.; Bisset, Leslie R.; ... Günthard, Huldrych F. 2013
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Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection Metzner, Karin J; Scherrer, Alexandra U; Preiswerk, Benjamin; Joos, Beda; ... Günthard, Huldrych F 2013
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A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control Bartha, István; Carlson, Jonathan M; Brumme, Chanson J; McLaren, Paul J; ... Fellay, Jacques 2013
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Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; ... Günthard, Huldrych F 2012
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Long-lasting protection of activity of nucleoside reverse transcriptase inhibitors and protease inhibitors (PIs) by boosted PI containing regimens Scherrer, Alexandra U; Böni, Jürg; Yerly Ferrillo, Sabine; Klimkait, Thomas; ... Günthard, Huldrych F 2012
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Diagnostic performance of line-immunoassay based algorithms for incident HIV-1 infection Schüpbach, Jörg; Bisset, Leslie R; Gebhardt, Martin D; Regenass, Stephan; ... Günthard, Huldrych F 2012
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Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations von Wyl, Viktor; Yerly Ferrillo, Sabine; Böni, Jürg; Shah, Cyril; ... Günthard, Huldrych F 2012
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Inferring epidemic contact structure from phylogenetic trees Leventhal, Gabriel E; Kouyos, Roger; Stadler, Tanja; Wyl, Viktor von; ... Bonhoeffer, Sebastian 2012
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Estimating the basic reproductive number from viral sequence data Stadler, Tanja; Kouyos, Roger; von Wyl, Viktor; Yerly Ferrillo, Sabine; ... Bonhoeffer, Sebastian 2012
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Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals: the Swiss HIV Cohort Study Fehr, Jan; Glass, Tracy R; Louvel, Séverine; Hamy, François; ... Klimkait, Thomas 2011
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Viral suppression rates in salvage treatment with raltegravir improved with the administration of genotypic partially active or inactive nucleoside/tide reverse transcriptase inhibitors Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F 2011
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High specificity of line-immunoassay based algorithms for recent HIV-1 infection independent of viral subtype and stage of disease Schüpbach, Jörg; Bisset, Leslie R; Regenass, Stephan; Bürgisser, Philippe; ... Rickenbach, Martin 2011
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Assessing Predicted HIV-1 Replicative Capacity in a Clinical Setting Kouyos, Roger D.; von Wyl, Viktor; Hinkley, Trevor; Petropoulos, Christos J.; ... Bonhoeffer, Sebastian 2011
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Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; ... Günthard, Huldrych F 2011
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Implementation of raltegravir in routine clinical practice: selection criteria for choosing this drug, virologic response rates, and characteristics of failures Scherrer, A. U.; von Wyl, Viktor; Fux, C. A.; Opravil, Milos; ... Gunthard, Huldrych 2010
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Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland Kouyos, R. D.; von Wyl, Viktor; Yerly Ferrillo, Sabine; Boni, Jurg; ... Gunthard, Huldrych 2010
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Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland von Wyl, Viktor; Yerly Ferrillo, Sabine; Burgisser, Philippe; Klimkait, Thomas; ... Swiss, H. I. V. Cohort Stud 2009
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Factors associated with the emergence of K65R in patients with HIV-1 infection treated with combination antiretroviral therapy containing tenofovir von Wyl, Viktor; Yerly Ferrillo, Sabine; Böni, Jürg; Bürgisser, Philippe; ... Günthard, Huldrych F. 2008
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The role of compartment penetration in PI-monotherapy: the Atazanavir-Ritonavir Monomaintenance (ATARITMO) Trial Vernazza, Pietro; Daneel, Synove; Schiffer, Veronique; Decosterd, Laurent; ... Hirschel, Bernard 2007
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Emergence of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: a comparison of different regimen types von Wyl, Viktor; Yerly Ferrillo, Sabine; Boni, Jurg; Burgisser, Philippe; ... Gunthard, Huldrych 2007
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Transmission of HIV-1 drug resistance in Switzerland: a 10-year molecular epidemiology survey Yerly Ferrillo, Sabine; von Wyl, Viktor; Ledergerber, Bruno; Boni, Jurg; ... Perrin, Luc 2007
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A prospective trial of structured treatment interruptions in human immunodeficiency virus infection Fagard, Catherine; Oxenius, Annette; Gunthard, Huldrych; Garcia, Felipe; ... Hirschel, Bernard 2003