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Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome Panfilio, Kristen A; Vargas Jentzsch, Iris M; Benoit, Joshua B; Erezyilmaz, Deniz; ... Richards, Stephen 2019
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BUSCO: assessing genome assembly and annotation completeness Seppey, Mathieu; Manni, Mose; Zdobnov, Evgeny 2019
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Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme Grillová, Linda; Bawa, Tanika; Mikalová, Lenka; Gayet-Ageron, Angèle; ... Bosshard, Philipp P 2018
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Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme Grillová, Linda; Bawa, Tanika; Mikalová, Lenka; Gayet-Ageron, Angèle; ... Bosshard, Philipp P 2018
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Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform Egli, Adrian; Blanc, Dominique S; Greub, Gilbert Daniel; Keller, Peter M; ... Xenarios, Ioannis 2018
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Molecular characterization of fluoroquinolones, macrolides, and imipenem resistance in Haemophilus influenzae: analysis of the mutations in QRDRs and assessment of the extent of the AcrAB-TolC-mediated resistance Cherkaoui, Abdessalam; Gaia, Nadia; Baud, Damien; Leo, Stefano; ... Schrenzel, Jacques 2018
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The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods Martiniano, Rui; Cassidy, Lara M.; Ó'Maoldúin, Ros; McLaughlin, Russell; ... Bradley, Daniel G. 2017
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The three-dimensional genome: regulating gene expression during pluripotency and development Andrey, Guillaume; Mundlos, Stefan 2017
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Messages from the first International Conference on Clinical Metagenomics (ICCMg) Ruppe, Etienne; Greub, Gilbert Daniel; Schrenzel, Jacques 2017
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Advances in venomics Oldrati, Vera; Arrell, Miriam; Violette, Aude; Perret, Frédéric; ... Stöcklin, Reto 2016
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Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances Chen, Wei-Hua; van Noort, Vera; Lluch-Senar, Maria; Hennrich, Marco L; ... Bork, Peer 2016
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Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci Liu, Chunyu; Kraja, Aldi T; Smith, Jennifer A; Brody, Jennifer A; ... Chasman, Daniel I 2016
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Unique features of a global human ectoparasite identified through sequencing of the bed bug genome Benoit, Joshua B; Palli, Subba R; Schal, Coby; Richards, Stephen 2016
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Lactic Acid Bacteria Isolated from Bovine Mammary Microbiota: Potential Allies against Bovine Mastitis Bouchard, Damien S; Seridan, Bianca; Saraoui, Taous; Rault, Lucie; ... Even, Sergine 2015
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The rise of operon-like gene clusters in plants Boycheva, Svetlana; Daviet, Laurent; Wolfender, Jean-Luc; Fitzpatrick, Thérésa Bridget 2014
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Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi Jiang, Xiaofang; Peery, Ashley; Hall, A Brantley; Sharma, Atashi; ... Tu, Zhijian 2014
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The common marmoset genome provides insight into primate biology and evolution Worley, Kim C 2014
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De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads Hernandez, David; Tewhey, Ryan; Veyrieras, Jean-Baptiste; Farinelli, Laurent Luca Denis; ... Schrenzel, Jacques 2014
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Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes Popadin, Konstantin; Nikolaev, Sergey Igorievich; Junier, Thomas; Baranova, Maria; Antonarakis, Stylianos 2013
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Assessment of transcript reconstruction methods for RNA-seq Steijger, Tamara; Abril, Josep F; Engström, Pär G; Kokocinski, Felix; ... Antonarakis, Stylianos 2013
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Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions Feldmann, Angelika; Ivanek, Robert; Murr, Rabih; Gaidatzis, Dimos; ... Schübeler, Dirk 2013
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Genomic variation and its impact on gene expression in Drosophila melanogaster Massouras, Andreas; Waszak, Sebastian M; Albarca-Aguilera, Monica; Hens, Korneel; ... Deplancke, Bart 2012
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Cell signaling and gene regulation Paszkowski, Jerzy; Martienssen, Robert A 2012
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BLUEPRINT to decode the epigenetic signature written in blood Adams, David; Antonarakis, Stylianos; Dermitzakis, Emmanouil 2012
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Next generation sequencing bioinformatics for the analysis of whole microbial genomes Calderon Copete, Sandra 2012
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Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi Waterhouse, Robert; Zdobnov, Evgeny; Kriventseva, Evgenia 2011
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Ectopic gene expression and organogenesis in Arabidopsis mutants missing BRU1 required for genome maintenance Ohno, Yusuke; Narangajavana, Jarunya; Yamamoto, Akiko; Hattori, Tsukaho; ... Takeda, Shin 2011
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The ecoresponsive genome of Daphnia pulex Colbourne, John K 2011
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Data analysis issues for allele-specific expression using Illumina's GoldenGate assay Ritchie, Matthew E.; Forrest, Matthew S.; Dimas, Antigone S.; Daelemans, Caroline; ... Tavare, Simon 2010
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Large-scale evaluation of bacterial genome content for the identification of epidemiological and virulence bases in MRSA Francois, Patrice 2010
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Cell biology. A revolving door for calcium Demaurex, Nicolas; Poburko, Damon 2009
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The genome sequence of taurine cattle: a window to ruminant biology and evolution Elsik, C. G. 2009
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Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells Attanasio, Catia; Reymond, Alexandre; Humbert, Richard; Lyle, Robert; ... Stamatoyannopoulos, John A. 2008
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The annotation of both human and mouse kinomes in UniProtKB/Swiss-Prot: one small step in manual annotation, one giant leap for full comprehension of genomes Braconi Quintaje, Silvia; Orchard, Sandra 2008
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Membrane stress is coupled to a rapid translational control of gene expression in chlorpromazine-treated cells De Filippi, Loic; Fournier, Margot; Cameroni, Elisabetta; Linder, Patrick; ... Deloche, Olivier 2007
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Evolutionary comparison provides evidence for pathogenicity of RMRP mutations Bonafe, Luisa; Dermitzakis, Emmanouil; Unger, Sheila; Greenberg, C. R.; ... Reymond, Alexandre 2005
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Gene finding in the chicken genome Eyras, Eduardo; Reymond, Alexandre; Castelo, Robert; Bye, J. M.; ... Brent, M. R. 2005
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L'être humain entre pouvoir et protection. Les défis de l'analyse du génome humain en perspective éthique Bondolfi, Alberto 2005
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Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages Bourque, Guillaume; Zdobnov, Evgeny; Bork, Peer; Pevzner, Pavel A; Tesler, Glenn 2005
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AnoEST: toward A. gambiae functional genomics Kriventseva, Evgenia; Koutsos, Anastasios C; Blass, Claudia; Kafatos, Fotis C; ... Zdobnov, Evgeny 2005
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Consistency of genome-based methods in measuring Metazoan evolution Zdobnov, Evgeny; von Mering, Christian; Letunic, Ivica; Bork, Peer 2005
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Complex haplotypes, copy number polymorphisms and coding variation in two recently divergent mouse strains Adams, D. J.; Dermitzakis, Emmanouil; Cox, Tony; Smith, James; ... Bradley, Allan 2005
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Conserved non-genic sequences - an unexpected feature of mammalian genomes Dermitzakis, Emmanouil; Reymond, Alexandre; Antonarakis, Stylianos 2005
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Annotating the Plasmodium genome and the enigma of the shikimate pathway McConkey, Glenn A; Pinney, John W; Westhead, David R; Plueckhahn, Kirsten; ... Kappes, Barbara 2004
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Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment Dermitzakis, Emmanouil; Kirkness, Ewen; Schwarz, Scott; Birney, Ewan; ... Antonarakis, Stylianos 2004
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Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs) Dermitzakis, Emmanouil; Reymond, Alexandre; Scamuffa, Nathalie; Ucla, Catherine; ... Antonarakis, Stylianos 2003
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Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes Guigo, Roderic; Dermitzakis, Emmanouil; Agarwal, Pankaj; Ponting, C. P.; ... Brent, M. R. 2003
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Ethische Aspekte der Genomanalyse Bondolfi, Alberto 2002
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The genome sequence of the malaria mosquito Anopheles gambiae Holt, Robert A 2002
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Interactive InterPro-based comparisons of proteins in whole genomes Kanapin, A; Apweiler, R; Biswas, M; Fleischmann, W; ... Zdobnov, Evgeny 2002
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