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The human gut mycobiome and the specific role of Candida albicans: where do we stand, as clinicians? Musumeci, Stefano; Coen, Matteo; Leidi, Antonio Siro Gabriele; Schrenzel, Jacques 2022
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Changes in the gut bacterial communities in colon cancer surgery patients: an observational study Abbas, Mohamed; Gaia, Nadia; Buchs, Nicolas; Delaune, Vaihere; ... Lazarevic, Vladimir 2022
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Performances of automated digital imaging of Gram-stained slides with on-screen reading against manual microscopy Fischer, Adrien Nicolas; Azam, Nouria; Rasga, Lara; Barras, Valérie; ... Cherkaoui, Abdessalam 2021
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Performance of Fully Automated Antimicrobial Disk Diffusion Susceptibility Testing Using Copan WASP Colibri Coupled to the Radian In-Line Carousel and Expert System Cherkaoui, Abdessalam; Renzi, Gesuele; Vuilleumier, Nicolas; Schrenzel, Jacques 2021
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Unexpectedly High False-Positive Rates for Haemophilus influenzae Using a Meningoencephalitis Syndromic PCR Panel in Two Tertiary Centers Zanella, Marie-Céline; Cherkaoui, Abdessalam; Hinic, Vladimira; Renzi, Gesuele; ... Schrenzel, Jacques 2021
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Case Report: About a Case of Hyperammonemia Syndrome Following Lung Transplantation: Could Metagenomic Next-Generation Sequencing Improve the Clinical Management? Michel, Charlotte; Raimo, Michela; Lazarevic, Vladimir; Gaia, Nadia; ... Hites, Maya 2021
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Temporal and regional incidence of carbapenemase-producing Enterobacterales, Switzerland, 2013 to 2018 Ramette, Alban; Gasser, Michael; Nordmann, Patrice; Zbinden, Reinhard; ... Kronenberg, Andreas 2021
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Rapid diagnostic tests for infectious diseases in the emergency department Bouzid, D; Zanella, Marie-Céline; Kerneis, S; Visseaux, B; ... Cattoir, V 2021
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New insights into pneumonia in patients on prolonged mechanical ventilation: need for a new paradigm addressing dysbiosis Rello, Jordi; Schrenzel, Jacques; Tejo, Alexandre M 2021
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The Potential Role of Clinical Metagenomics in Infectious Diseases: Therapeutic Perspectives d'Humières, Camille; Salmona, Maud; Dellière, Sarah; Leo, Stefano; ... Ruppe, Etienne 2021
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Outbreak of Pseudomonas aeruginosa producing VIM carbapenemase in an intensive care unit and its termination by implementation of waterless patient care Catho, Gaud; Martischang, Romain; Boroli, Filippo; Chraiti, Marie-Noëlle; ... Harbarth, Stéphan Juergen 2021
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Vertical and horizontal dissemination of an incC plasmid harbouring rmtb 16s rRNA methylase gene, conferring resistance to plazomicin, among invasive ST258 and ST16 KPC-producing Klebsiella pneumoniae Roch, Mélanie; Sierra Miranda, Roberto Mario; Sands, Kirsty; Martins, Willames M.B.S.; ... Andrey, Diego Olivier 2021
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Oral dysbiosis and inflammation in Parkinson's disease Fleury, Vanessa; Zekeridou, Alkisti; Lazarevic, Vladimir; Gaia, Nadia; ... Burkhard, Pierre 2021
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Gut barrier and microbiota changes with glycine and branched‐chain amino acid supplementation in chronic haemodialysis patients Genton Graf, Laurence; Pruijm, Menno; Teta, Daniel; Bassi, Isabelle; ... Schrenzel, Jacques 2021
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Glycine increases fat‐free mass in malnourished haemodialysis patients: a randomized double‐blind crossover trial Genton Graf, Laurence; Teta, Daniel; Pruijm, Menno; Stoermann Chopard, Catherine Augusta; ... Schrenzel, Jacques 2021
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Effects of antibiotic duration on the intestinal microbiota and resistome: The PIRATE RESISTANCE project, a cohort study nested within a randomized trial Leo, Stefano; Lazarevic, Vladimir; Von Dach-Saouter, Elodie; Kaiser, Laurent; ... Csaki Huttner, Angela 2021
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Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot Study Genton Graf, Laurence; Lazarevic, Vladimir; Stojanovic, Ozren; Spiljar, Martina; ... Schrenzel, Jacques 2021
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Time to detection of growth for mycobacterium tuberculosis in a low incidence area Vongthilath-Moeung, Rechana; Poncet, Antoine; Renzi, Gesuele; Schrenzel, Jacques; Janssens, Jean-Paul 2021
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Staphylococcus aureus Transcriptome Data and Metabolic Modelling Investigate the Interplay of Ser/Thr Kinase PknB, Its Phosphatase Stp, the glmR/yvcK Regulon and the cdaA Operon for Metabolic Adaptation Liang, Chunguang; Rios-Miguel, Ana B.; Jarick, Marcel; Neurgaonkar, Priya; ... Dandekar, Thomas 2021
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Mycobacterium chelonae infection identified by metagenomic next-generation sequencing as the probable cause of acute contained rupture of a biological composite graft—a case report Büchler, Andrea C.; Lazarevic, Vladimir; Gaia, Nadia; Girard, Myriam; ... Schrenzel, Jacques 2021
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Second Periprosthetic Joint Infection Caused by Streptococcus dysgalactiae: How Genomic Sequencing Can Help Defining the Best Therapeutic Strategy Pham, Truong-Thanh; Lazarevic, Vladimir; Gaia, Nadia; Girard, Myriam; ... Schrenzel, Jacques 2020
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Rapid high resolution melting assay to differentiate Streptococcus suis serotypes 2,1/2, 1, and 14 Scherrer, Simone; Rademacher, Fenja; Spoerry Serrano, Nathalie; Schrenzel, Jacques; ... Landolt, Patricia 2020
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Rapid identification by MALDI-TOF/MS and antimicrobial disk diffusion susceptibility testing for positive blood cultures after a short incubation on the WASPLab Cherkaoui, Abdessalam; Renzi, Gesuele; Azam, Nouria; Schorderet, Didier; ... Schrenzel, Jacques 2020
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Comparative transcriptomic and functional assessments of linezolid-responsive small RNA genes in staphylococcus aureus Gao, Wei; Guérillot, Romain; Lin, Ya Hsun; Tree, Jai; ... Stinear, Timothy P. 2020
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From genotype to antibiotic susceptibility phenotype in the order Enterobacterales: a clinical perspective Ruppe, Etienne; Cherkaoui, Abdessalam; Charretier, Yannick; Girard, Myriam; ... Schrenzel, Jacques 2020
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Metagenomic Characterization of Gut Microbiota of Carriers of Extended-Spectrum Beta-Lactamase or Carbapenemase-Producing Enterobacteriaceae Following Treatment with Oral Antibiotics and Fecal Microbiota Transplantation: Results from a Multicenter Randomized Trial Leo, Stefano; Lazarevic, Vladimir; Girard, Myriam; Gaia, Nadia; ... Huttner, Benedikt 2020
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Performances and usefulness of Xpert MTB/RIF assay in low-incidence settings: not that bad? Pham, Truong-Thanh; Schrenzel, Jacques; Janssens, Jean-Paul; Emonet, Stéphane 2020
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Implementation of the WASPLab™ and first year achievements within a university hospital Cherkaoui, Abdessalam; Renzi, Gesuele; Viollet, Arnaud; Fleischmann, Mark Mike; ... Schrenzel, Jacques 2020
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Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland Scherrer, Simone; Rosato, Giuliana; Spoerry Serrano, Nathalie; Stevens, Marc J A; ... Peterhans, Sophie 2020
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Septic shock caused by Capnocytophaga canis after a cat scratch Donner, Viviane Pascale; Buzzi, Marta; Lazarevic, Vladimir; Gaia, Nadia; ... Schrenzel, Jacques 2020
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Symposium report: one health meets sequencing Egli, Adrian; Koch, Daniel; Danuser, Jürg; Hendriksen, Rene S.; ... Stephan, Roger 2020
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Estimating the association between antibiotic exposure and colonization with extended-spectrum β-lactamase-producing Gram-negative bacteria using machine learning methods: a multicentre, prospective cohort study Tacconelli, E.; Górska, A.; De Angelis, G.; Lammens, C.; ... Gladstone, B.P. 2020
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Phylogeographical Analysis Reveals the Historic Origin, Emergence, and Evolutionary Dynamics of Methicillin-Resistant Staphylococcus aureus ST228 Abdelbary, Mohamed M H; Feil, Edward J; Senn, Laurence; Petignat, Christiane; ... Blanc, Dominique S 2020
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Digital microbiology Egli, Adrian; Schrenzel, Jacques; Greub, Gilbert Daniel 2020
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Changes in microbiota profiles after prolonged frozen storage of stool suspensions Dorsaz, Stéphane; Charretier, Yannick; Girard, Myriam; Gaia, Nadia; ... Lazarevic, Vladimir 2020
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Cutaneous ulcers revealing diphtheria: A re-emerging disease imported from Indian Ocean countries? Alberto, Chloé; Osdoit, S; Villani, A-P; Bellec, L; ... Bagny, K 2020
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Discordant Clostridioides difficile diagnostic assay and treatment practice: a cross-sectional study in a tertiary care hospital, Geneva, Switzerland Lenggenhager, Lauriane; Zanella, Marie-Céline; Poncet, Antoine; Kaiser, Laurent; Schrenzel, Jacques 2020
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Mapping of aetiologies of gastroenteritis: a systematic review and meta-analysis of pathogens identified using a multiplex screening array Meyer, Jérémy; Roos, Elin; Combescure, Christophe; Buchs, Nicolas; ... Schrenzel, Jacques 2020
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Influenza-associated aspergillosis in critically-ill patients-a retrospective bicentric cohort study Waldeck, Frederike; Boroli, Filippo; Suh, Noémie; Wendel Garcia, Pedro David; ... Albrich, Werner Christian 2020
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The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient diet Somm, Emmanuel; Montandon, Sophie Anne; Loizides-Mangold, Ursula Elfriede; Gaia, Nadia; ... Jornayvaz, François 2020
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Comparison of the Copan WASPLab incorporating the BioRad expert system against the SIRscan 2000 automatic for routine antimicrobial disc diffusion susceptibility testing Cherkaoui, Abdessalam; Renzi, Gesuele; Fischer, Adrien Nicolas; Azam, Nouria; ... Schrenzel, Jacques 2020
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Impact of Total Laboratory Automation on Turnaround Times for Urine Cultures and Screening Specimens for MRSA, ESBL, and VRE Carriage: Retrospective Comparison With Manual Workflow Cherkaoui, Abdessalam; Renzi, Gesuele; Martischang, Romain; Harbarth, Stéphan Juergen; ... Schrenzel, Jacques 2020
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Comparison of analytical performances of the Roche Cobas 6800 CT/NG assay with the Abbott m2000 Real Time CT/NG assay for detecting Chlamydia trachomatis and Neisseria gonorrhoeae Cherkaoui, Abdessalam; Renzi, Gesuele; Mombelli, Michèle; Jaton, Katia; ... Schrenzel, Jacques 2019
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Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative Endocarditis Kolb, Manon; Lazarevic, Vladimir; Emonet, Stéphane; Calmy, Alexandra; ... Schrenzel, Jacques 2019
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Inactivation of farR causes high rhodomyrtone resistance and increased pathogenicity in staphylococcus aureus Nguyen, Minh-Thu; Saising, Jongkon; Tribelli, Paula Maria; Nega, Mulugeta; ... Götz, Friedrich 2019
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Massive diversity in whole-genome sequences of streptococcus suis strains from infected pigs in Switzerland Stevens, Marc J A; Spoerry Serrano, Nathalie; Cernela, Nicole; Schmitt, Sarah; ... Stephan, Roger 2019
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High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis, and meningitis. A narrative review and clinical appraisal Zanella, Marie-Céline; Lenggenhager, Lauriane; Schrenzel, Jacques; Cordey, Samuel; Kaiser, Laurent 2019
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Messages from the third international conference on clinical metagenomics (ICCMg3) Ruppe, Etienne; Schrenzel, Jacques 2019
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A molecular based diagnosis of positive blood culture in the context of viral haemorrhagic fever: proof of concept Cherkaoui, Abdessalam; Cherpillod, Pascal; Renzi, G; Schrenzel, Jacques; ... Schibler, Manuel 2019
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Targeting the gut microbiota to treat cachexia Genton Graf, Laurence; Mareschal, Julie; Charretier, Yannick; Lazarevic, Vladimir; ... Schrenzel, Jacques 2019
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