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 TitleAuthors / EditorsDate
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Triage by ranking to support the curation of protein interactions Mottin, Luc; Pasche, Emilie; Gobeill, Julien; Rech De Laval, Valentine; ... Ruch, Patrick 2017
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The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases Zdobnov, Evgeny 2016
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A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17 Liu, Suli; Im, Hogune; Bairoch, Amos Marc; Cristofanilli, Massimo; ... Hancock, William S 2013
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neXtProt: organizing protein knowledge in the context of human proteome projects Gaudet, Pascale; Argoud-puy, Ghislaine; Cusin, Isabelle; Duek, Paula Debora; ... Lane, Lydie 2013
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A large-scale evaluation of computational protein function prediction Radivojac, Predrag 2013
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neXtProt: a knowledge platform for human proteins Lane, Lydie; Argoud-puy, Ghislaine; Britan, Aurore; Cusin, Isabelle; ... Bairoch, Amos Marc 2012
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UniPathway: a resource for the exploration and annotation of metabolic pathways Morgat, Anne; Coissac, Eric; Coudert, Elisabeth; Axelsen, Kristian Buhl; ... Viari, Alain 2012
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A step further in the analysis of human bile proteome Farina, Annarita; Dumonceau, Jean-Marc; Delhaye, Myriam; Frossard, Jean-Louis; ... Lescuyer, Pierre 2011
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Mass spectrometry in high-throughput proteomics: ready for the big time Nilsson, Tommy; Mann, Matthias; Aebersold, Ruedi; Yates, John R (3rd); ... Bergeron, John J M 2010
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PROSITE, a protein domain database for functional characterization and annotation Sigrist, Christian; Cerutti, Lorenzo; De Castro, Eduardo; Langendijk Genevaux, Petra Simone; ... Hulo, Nicolas 2010
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A large-scale protein-function database Apweiler, Rolf; Armstrong, Richard; Bairoch, Amos Marc; Cornish-Bowden, Athel; ... Tipton, Keith 2010
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HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot De Oliveira Lima, Tania; Auchincloss Damay, Andréa; Coudert, Elisabeth; Keller, Guillaume Bertrand; ... Bairoch, Amos Marc 2009
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Infrastructure for the life sciences: design and implementation of the UniProt website Jain, Eric; Bairoch, Amos Marc; Duvaud, Séverine; Phan, Isabelle; ... Gasteiger, Elisabeth 2009
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Phosphoproteome sequence analysis and significance: mining association patterns around phosphorylation sites utilizing MAPRes Ahmad, Ishtiaq; Mehmood, Abid; Khurshid, Ahmed; Qazi, Wajahat M.; ... Nasir-ud-Din, 2009
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The 20 years of PROSITE Hulo, Nicolas; Bairoch, Amos Marc; Bulliard, Virginie; Cerutti, Lorenzo; ... Sigrist, Christian 2008
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Mapping proteins to disease terminologies: from UniProt to MeSH Mottaz, Anais; Yip Sonderegger, Yum Lina; Ruch, Patrick; Veuthey, Anne-Lise 2008
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The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server Hoogland, Christine; Mostaguir, Khaled; Appel, Ron David; Lisacek, Frédérique 2008
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The annotation of both human and mouse kinomes in UniProtKB/Swiss-Prot: one small step in manual annotation, one giant leap for full comprehension of genomes Braconi Quintaje, Silvia; Orchard, Sandra 2008
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UniProtKB/Swiss-Prot Boutet, Emmanuel; Lieberherr, Damien; Tognolli, Michael; Schneider, Michel; Bairoch, Amos Marc 2007
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How shall we use the proteomics toolbox for biomarker discovery? Lescuyer, Pierre; Hochstrasser, Denis; Rabilloud, Thierry 2007
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Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE. Schuemie, Martijn; Chichester, Christine; Lisacek, Frédérique; Coute, Yohann; ... Mons, Barend 2007
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In silico determination of intracellular glycosylation and phosphorylation sites in human selectins: implications for biological function Ahmad, Ishtiaq; Hoessli, Daniel; Gupta, Ramneek; Walker-Nasir, Evelyne; ... Shakoori, A. R. 2007
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Multi-dimensional HPLC/MS of the nucleolar proteome using HPLC-chip/MS. Vollmer, Martin; Hörth, Patric; Rozing, Gerard; Coute, Yohann; ... Sanchez, Jean-Charles 2006
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The PROSITE database Hulo, Nicolas; Bairoch, Amos Marc; Bulliard, Virginie; Cerutti, Lorenzo; ... Sigrist, Christian 2006
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ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins De Castro, Eduardo; Sigrist, Christian; Gattiker, Alexandre; Bulliard, Virginie; ... Hulo, Nicolas 2006
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HUPO Brain Proteome Project: summary of the pilot phase and introduction of a comprehensive data reprocessing strategy Hamacher, Michael; Carrette, Odile; Sanchez, Jean-Charles 2006
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A novel strategy using MASCOT Distiller for analysis of cleavable isotope-coded affinity tag data to quantify protein changes in plasma Leung, Kit-Yi; Lescuyer, Pierre; Campbell, James; Byers, Helen L; ... Ward, Malcolm A 2005
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ProRule: a new database containing functional and structural information on PROSITE profiles Sigrist, Christian; De Castro, Eduardo; Langendijk Genevaux, Petra Simone; Le Saux, Virginie Anne Jeanne; ... Hulo, Nicolas 2005
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The Universal Protein Resource (UniProt) Bairoch, Amos Marc; Apweiler, Rolf; Wu, Cathy H; Barker, Winona C; ... Yeh, Lai-Su L 2005
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Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase Jungo, Florence; Bairoch, Amos Marc 2005
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Plant protein annotation in the UniProt Knowledgebase Schneider, Michel; Bairoch, Amos Marc; Wu, Cathy H; Apweiler, Rolf 2005
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Nonredundant mass spectrometry: a strategy to integrate mass spectrometry acquisition and analysis Scherl, Alexander; Francois, Patrice; Converset, Véronique; Bento, Manuela; ... Corthals, Garry 2004
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SWISS-2DPAGE, ten years later Hoogland, Christine; Mostaguir, Khaled; Sanchez, Jean-Charles; Hochstrasser, Denis; Appel, Ron David 2004
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IntEnz, the integrated relational enzyme database Fleischmann, Astrid; Darsow, Michael; Degtyarenko, Kirill; Fleischmann, Wolfgang; ... Apweiler, Rolf 2004
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IntAct: an open source molecular interaction database Hermjakob, Henning; Montecchi-Palazzi, Luisa; Lewington, Chris; Mudali, Sugath; ... Apweiler, Rolf 2004
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Protein sequence databases Apweiler, Rolf; Bairoch, Amos Marc; Wu, Cathy H 2004
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Recent improvements to the PROSITE database Hulo, Nicolas; Sigrist, Christian; Le Saux, Virginie Anne Jeanne; Langendijk Genevaux, Petra Simone; ... Bairoch, Amos Marc 2004
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UniProt: the Universal Protein knowledgebase Apweiler, Rolf; Bairoch, Amos Marc; Wu, Cathy H; Barker, Winona C; ... Yeh, Lai-Su L 2004
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NEWT, a new taxonomy portal Phan, Isabelle; Pilbout, Sandrine; Fleischmann, Wolfgang; Bairoch, Amos Marc 2003
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ExPASy: The proteomics server for in-depth protein knowledge and analysis Gasteiger, Elisabeth; Gattiker, Alexandre; Hoogland, Christine; Ivanyi, Ivan; ... Bairoch, Amos Marc 2003
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The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 Boeckmann, Brigitte; Bairoch, Amos Marc; Apweiler, Rolf; Blatter, Marie-Claude; ... Schneider, Michel 2003
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Interactive InterPro-based comparisons of proteins in whole genomes Kanapin, A; Apweiler, R; Biswas, M; Fleischmann, W; ... Zdobnov, Evgeny 2002
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Matrix-assisted laser desorption/ionization-tandem mass spectrometry with high resolution and sensitivity for identification and characterization of proteins Bienvenut, Willy-Vincent; Deon, Catherine; Pasquarello Mosimann, Carla; Campbell, Jennifer M; ... Hochstrasser, Denis 2002
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Functional proteomic analysis of human nucleolus Scherl, Alexander; Coute, Yohann; Deon, Catherine; Callé, Aleth; ... Diaz, Jean-Jacques 2002
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ScanProsite: a reference implementation of a PROSITE scanning tool Gattiker, Alexandre; Gasteiger, Elisabeth; Bairoch, Amos Marc 2002
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High-quality protein knowledge resource: SWISS-PROT and TrEMBL. O'Donovan, Claire; Martin, Maria Jesus; Gattiker, Alexandre; Gasteiger, Elisabeth; ... Apweiler, Rolf 2002
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PROSITE: a documented database using patterns and profiles as motif descriptors Sigrist, Christian; Cerutti, Lorenzo; Hulo, Nicolas; Gattiker, Alexandre; ... Bucher, Philipp 2002
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The PROSITE database, its status in 2002 Falquet, Laurent; Pagni, Marco; Bucher, Philipp; Hulo, Nicolas; ... Bairoch, Amos Marc 2002
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The Sulfinator: predicting tyrosine sulfation sites in protein sequences Monigatti, Flavio; Gasteiger, Elisabeth; Bairoch, Amos Marc; Jung, Eva 2002
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InterProScan--an integration platform for the signature-recognition methods in InterPro Zdobnov, Evgeny; Apweiler, Rolf 2001
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