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 TitleAuthors / EditorsDate
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Dissecting Cell Lineage Specification and Sex Fate Determination in Gonadal Somatic Cells Using Single-Cell Transcriptomics Stevant, Isabelle; Kuhne, Françoise; Greenfield, Andy; Chaboissier, Marie-Christine; ... Nef, Serge 2019
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Cellular circadian period length inversely correlates with HbA1c levels in individuals with type 2 diabetes Sinturel, Flore; Makhlouf, Anne-Marie; Meyer, Patrick; Tran, Christel; ... Dibner, Charna 2019
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Deciphering Cell Lineage Specification during Male Sex Determination with Single-Cell RNA Sequencing Stevant, Isabelle; Neirijnck, Yasmine; Borel, Christelle; Escoffier Breancon, Jessica; ... Nef, Serge 2018
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Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal muscle Perrin, Laurent; Loizides-Mangold, Ursula; Chanon, Stéphanie; Gobet, Cédric; ... Dibner, Charna 2018
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Contribution of allelic imbalance to colorectal cancer Palin, Kimmo; Pitkänen, Esa; Turunen, Mikko; Sahu, Biswajyoti; ... Aaltonen, Lauri A. 2018
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MRPL53, a new candidate gene for orofacial clefting, identified using an eQTL approach Masotti, C.; Brito, L.A.; Nica, A.C.; Ludwig, K.U.; ... Passos-Bueno, M.R. 2018
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Angiogenin and osteoprotegerin are type II muscle specific myokines protecting pancreatic beta-cells against proinflammatory cytokines Rutti Roch, Sabine; Dusaulcy, Rodolphe; Hansen, Jakob S.; Howald, Cédric; ... Bouzakri, Karim 2018
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Age-dependent changes in mean and variance of gene expression across tissues in a twin cohort Vinuela Rodriguez, Ana; Brown, Andrew Anand; Buil Demur, Alfonso Alberto; Tsai, Pei-Chien; ... Small, Kerrin S 2018
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Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation Gamazon, Eric R.; Segrè, Ayellet V.; van de Bunt, Martijn; Wen, Xiaoquan; ... Ardlie, Kristin G. 2018
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Comprehensive evaluation of coding region point mutations in microsatellite‐unstable colorectal cancer Kondelin, Johanna; Salokas, Kari; Saarinen, Lilli; Ovaska, Kristian; ... Aaltonen, Lauri A 2018
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The effect of genetic variation on promoter usage and enhancer activity Garieri, Marco; Delaneau, Olivier; Santoni, Federico; Fish, Richard; ... Fort, Alexandre 2017
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Genetic correlations reveal the shared genetic architecture of transcription in human peripheral blood Lukowski, Samuel W.; Lloyd-Jones, Luke R.; Holloway, Alexander; Kirsten, Holger; ... Powell, Joseph E. 2017
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The genomic landscape of human cellular circadian variation points to a novel role for the signalosome Gaspar, Ludmila; Howald, Cédric; Popadin, Konstantin; Maier, Bert; ... Brown, Steven A 2017
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Molecular-Subtype-Specific Biomarkers Improve Prediction of Prognosis in Colorectal Cancer Bramsen, Jesper Bertram; Rasmussen, Mads Heilskov; Ongen, Halit; Mattesen, Trine Block; ... Andersen, Claus Lindbjerg 2017
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MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets Fort, Alexandre; Panousis, Nikolaos; Garieri, Marco; Antonarakis, Stylianos; ... Delaneau, Olivier 2017
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Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types Ecker, Simone; Chen, Lu; Pancaldi, Vera; Bagger, Frederik O.; ... Paul, Dirk S. 2017
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Integrative genomic analysis implicates limited peripheral adipose storage capacity in the pathogenesis of human insulin resistance Lotta, Luca A; Gulati, Pawan; Day, Felix R; Payne, Felicity; ... Scott, Robert A 2017
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Estimating the causal tissues for complex traits and diseases Ongen, Halit; Brown, Andrew Anand; Delaneau, Olivier; Panousis, Nikolaos; ... Dermitzakis, Emmanouil 2017
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Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues Brown, Andrew Anand; Vinuela Rodriguez, Ana; Delaneau, Olivier; Spector, Tim D; ... Dermitzakis, Emmanouil 2017
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Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis Yang, Fan; Wang, Jiebiao; Dermitzakis, Emmanouil; Pierce, Brandon L.; Chen, Lin S. 2017
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Co-expression networks reveal the tissue-specific regulation of transcription and splicing Saha, Ashis; Kim, Yungil; Gewirtz, Ariel D.H.; Jo, Brian; ... Battle, Alexis 2017
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Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS Rosenberger, George; Liu, Yansheng; Röst, Hannes L; Ludwig, Christina; ... Aebersold, Ruedi 2017
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A complete tool set for molecular QTL discovery and analysis Delaneau, Olivier; Ongen, Halit; Brown, Andrew Anand; Fort, Alexandre; ... Dermitzakis, Emmanouil 2017
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Time-dependent genetic effects on gene expression implicate aging processes Bryois, Julien; Buil Demur, Alfonso Alberto; Ferreira, Pedro; Panousis, Nikolaos; ... Dermitzakis, Emmanouil 2017
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The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression Liu, Ning Qing; ter Huurne, Menno; Nguyen, Luan N.; Peng, Tianran; ... Stunnenberg, Hendrik G. 2017
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Mapping eQTLs with RNA-seq reveals novel susceptibility genes, non-coding RNAs and alternative-splicing events in systemic lupus erythematosus Odhams, Christopher A.; Cortini, Andrea; Chen, Lingyan; Roberts, Amy L.; ... Cunninghame Graham, Deborah S. 2017
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Chromosomal contacts connect loci associated with autism, BMI and head circumference phenotypes Loviglio, M N; Leleu, M; Männik, K; Passeggeri, M; ... Reymond, A 2017
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Sequential transcriptional waves direct the differentiation of newborn neurons in the mouse neocortex Telley, Ludovic; Govindan, Subashika; Prados, Julien; Stevant, Isabelle; ... Jabaudon, Denis 2016
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Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis Hinds, David A; Buil Demur, Alfonso Alberto; Ziemek, Daniel; Martinez-Perez, Angel; ... Sabater-Lleal, Maria 2016
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Fast and efficient QTL mapper for thousands of molecular phenotypes Ongen, Halit; Buil Demur, Alfonso Alberto; Brown, Andrew Anand; Dermitzakis, Emmanouil; Delaneau, Olivier 2016
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Adiposity-Dependent Regulatory Effects on Multi-tissue Transcriptomes Glastonbury, Craig A.; Viñuela, Ana; Buil Demur, Alfonso Alberto; Halldorsson, Gisli H.; ... Small, Kerrin S. 2016
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SNHG16 is regulated by the Wnt pathway in colorectal cancer and affects genes involved in lipid metabolism Christensen, Lise Lotte; True, Kirsten; Hamilton, Mark P.; Nielsen, Morten M.; ... Andersen, Claus L. 2016
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IL-13 improves beta-cell survival and protects against IL-1beta-induced beta-cell death Rutti Roch, Sabine; Howald, Cédric; Arous, Caroline; Dermitzakis, Emmanouil; ... Bouzakri, Karim 2016
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Short Term Exposure of Beta Cells to Low Concentrations of Interleukin-1β Improves Insulin Secretion through Focal Adhesion and Actin Remodeling and Regulation of Gene Expression Arous, Caroline; Ferreira, Pedro G; Dermitzakis, Emmanouil; Halban, Philippe A. 2015
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Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans GTEx Consortium 2015
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Assessing allele-specific expression across multiple tissues from RNA-seq read data Pirinen, Matti; Lappalainen, Tuuli Emilia; Zaitlen, Noah A; Dermitzakis, Emmanouil; ... Rivas, Manuel A 2015
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The transcriptome of equine peripheral blood mononuclear cells Pacholewska, Alicja; Drögemüller, Michaela; Klukowska-Rötzler, Jolanta; Lanz, Simone; ... Jagannathan, Vidhya 2015
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Quantitative variability of 342 plasma proteins in a human twin population Liu, Yansheng; Buil Demur, Alfonso Alberto; Collins, Ben C; Gillet, Ludovic C J; ... Aebersold, Ruedi 2015
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Transcript Expression Data from Human Islets Links Regulatory Signals from Genome-Wide Association Studies for Type 2 Diabetes and Glycemic Traits to Their Downstream Effectors van de Bunt, Martijn; Manning Fox, Jocelyn E; Dai, Xiaoqing; Barrett, Amy; ... Gloyn, Anna L 2015
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Alternative Splicing QTLs in European and African Populations Ongen, Halit; Dermitzakis, Emmanouil 2015
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Impaired Cell Cycle Regulation in a Natural Equine Model of Asthma Pacholewska, Alicja; Jagannathan, Vidhya; Drögemüller, Michaela; Klukowska-Rötzler, Jolanta; ... Gerber, Vincent 2015
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Human genomics. The human transcriptome across tissues and individuals Melé, Marta; Ferreira, Pedro G; Reverter, Ferran; DeLuca, David S; ... Guigó, Roderic 2015
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Biased allelic expression in human primary fibroblast single cells Borel, Christelle; Ferreira Marinheiro, Pedro; Santoni, Federico; Delaneau, Olivier; ... Antonarakis, Stylianos 2015
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Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing Gutierrez Arcelus, Maria; Ongen, Halit; Lappalainen, Tuuli Emilia; Montgomery, Stephen; ... Dermitzakis, Emmanouil 2015
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Integrated analysis of mRNA and miRNA expression in response to interleukin-6 in hepatocytes Lukowski, Samuel; Fish, Richard; Martin-Levilain, Juliette; Gonelle-Gispert, Carmen; ... Neerman Arbez, Marguerite 2015
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Integrated analysis of mRNA and miRNA expression in response to interleukin-6 in hepatocytes Lukowski, Samuel; Fish, Richard; Martin-Levilain, Juliette; Gonelle-Gispert, Carmen; ... Neerman Arbez, Marguerite 2015
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Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins Buil Demur, Alfonso Alberto; Brown, Andrew Anand; Lappalainen, Tuuli Emilia; Viñuela, Ana; ... Dermitzakis, Emmanouil 2015
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Population Variation and Genetic Control of Modular Chromatin Architecture in Humans Waszak, Sebastian M; Delaneau, Olivier; Gschwind, Andreas R; Kilpinen, Leena Helena; ... Dermitzakis, Emmanouil 2015
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Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome Rivas, Manuel A; Pirinen, Matti; Conrad, Donald F; Lek, Monkol; ... MacArthur, Daniel G. 2015
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Fractalkine (CX3CL1), a new factor protecting β-cells against TNFα Rutti Roch, Sabine; Arous, Caroline; Schvartz, Domitille; Timper, Katharina; ... Bouzakri, Karim 2014
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