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De novo finished 2.8 Mbp Staphylococcus aureus genome assembly from 100 bp short and long range paired-end reads Hernandez, David; Tewhey, Ryan; Veyrieras, Jean-Baptiste; Farinelli, Laurent Luca Denis; ... Schrenzel, Jacques 2014
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Fine-tuned characterization of Staphylococcus aureus Newbould 305, a strain associated with mild and chronic mastitis in bovines Peton, Vincent; Bouchard, Damien S; Almeida, Sintia; Rault, Lucie; ... Le Loir, Yves 2014
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Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61 Falentin, Hélène; Naquin, Delphine; Loux, Valentin; Barloy-Hubler, Frédérique; ... Le Loir, Yves 2014
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Characterization of Streptococcus tigurinus small-colony variants causing prosthetic joint infection by comparative whole-genome analyses Zbinden, Andrea; Quiblier, Chantal; Hernandez, David; Herzog, Kathrin; ... Francois, Patrice 2014
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A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis Whiteson, Katrine L; Hernandez, David; Lazarevic, Vladimir; Gaia, Nadia; ... Schrenzel, Jacques 2014
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Genome Sequences of Sequence Type 45 (ST45) Persistent Methicillin-Resistant Staphylococcus aureus (MRSA) Bacteremia Strain 300-169 and ST45 Resolving MRSA Bacteremia Strain 301-188 Hernandez, David; Seidl, Kati; Corvaglia, Anna-Rita; Bayer, Arnold S; ... Francois, Patrice 2014
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Whole-Genome Sequence of the Ancestral Animal-Borne ST398 Staphylococcus aureus Strain S123 van der Mee-Marquet, Nathalie; Hernandez, David; Bertrand, Xavier; Quentin, Roland; ... Francois, Patrice 2013
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Whole-Genome Sequences of Two Staphylococcus aureus ST398 Strains of Human Origin, S94 and S100 Corvaglia, Anna-Rita; Francois, Patrice; Bertrand, Xavier; Quentin, Roland; ... van der Mee-Marquet, Nathalie 2013
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Whole-Genome Sequences of Staphylococcus aureus ST398 Strains of Animal Origin Hernandez, David; van der Mee-Marquet, Nathalie; Kluytmans, Jan; Donnio, Pierre-Yves; ... Francois, Patrice 2013
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Analysis of the small RNA transcriptional response in multidrug-resistant Staphylococcus aureus after antimicrobial exposure Howden, Benjamin Peter; Beaume, Marie-Emilie; Harrison, Paul F; Hernandez, David; ... Stinear, Timothy P 2013
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Analysis of prophages harbored by the human-adapted subpopulation of Staphylococcus aureus CC398 van der Mee-Marquet, Nathalie; Corvaglia, Anna-Rita; Valentin, Anne-Sophie; Hernandez, David; ... Francois, Patrice 2013
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Analysis of the salivary microbiome using culture-independent techniques Lazarevic, Vladimir; Whiteson, Katrine; Gaia, Nadia; Gizard, Yann; ... Schrenzel, Jacques 2012
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Genome sequence of Staphylococcus aureus Newbould 305, a strain associated with mild bovine mastitis Bouchard, Damien; Peton, Vincent; Almeida, Sintia; Le Maréchal, Caroline; ... Le Loir, Yves 2012
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Epidemiology and virulence insights from MRSA and MSSA genome analysis Lazarevic, Vladimir; Beaume, Marie-Emilie; Corvaglia, Anna; Hernandez, David; ... Francois, Patrice 2011
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High prevalence of the arginine catabolic mobile element in carriage isolates of methicillin-resistant Staphylococcus epidermidis Barbier, François; Lebeaux, David; Hernandez, David; Delannoy, Anne-Sophie; ... Ruimy, Raymond 2011
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Orientation and expression of methicillin-resistant Staphylococcus aureus small RNAs by direct multiplexed measurements using the nCounter of NanoString technology Beaume, Marie-Emilie; Hernandez, David; Docquier, Mylene; Delucinge-Vivier, Céline; ... Francois, Patrice 2011
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Staphylococcus aureus seroproteomes discriminate ruminant isolates causing mild or severe mastitis Le Maréchal, Caroline; Jardin, Julien; Jan, Gwenaël; Even, Sergine; ... Le Loir, Yves 2011
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Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain Nair, Dhanalakshmi; Memmi, Guido; Hernandez, David; Bard, Jonathan; ... Cheung, Ambrose L 2011
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Molecular basis of virulence in Staphylococcus aureus mastitis Le Maréchal, Caroline; Seyffert, Nubia; Jardin, Julien; Hernandez, David; ... Le Loir, Yves 2011
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Genome sequences of two Staphylococcus aureus ovine strains that induce severe (strain O11) and mild (strain O46) mastitis Le Maréchal, Caroline; Hernandez, David; Schrenzel, Jacques; Even, Sergine; ... Le Loir, Yves 2011
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New approaches for functional genomic studies in staphylococci Beaume, Marie; Hernandez, David; Francois, Patrice; Schrenzel, Jacques 2010
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A type III-like restriction endonuclease functions as a major barrier to horizontal gene transfer in clinical Staphylococcus aureus strains Corvaglia, Anna Rita; Francois, Patrice; Hernandez, David; Perron, Karl; ... Schrenzel, Jacques 2010
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Study of inter- and intra-individual variations in the salivary microbiota Lazarevic, Vladimir; Whiteson, Katrine; Hernandez, David; Francois, Patrice; Schrenzel, Jacques 2010
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Methicillin-resistant coagulase-negative staphylococci in the community: high homology of SCCmec IVa between Staphylococcus epidermidis and major clones of methicillin-resistant Staphylococcus aureus Barbier, Francois; Ruppe, Etienne; Hernandez, David; Lebeaux, David; ... Ruimy, Raymond 2010
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Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions Beaume, Marie-Emilie; Hernandez, David; Farinelli, Laurent Luca Denis; Deluen, Cecile; ... Francois, Patrice 2010
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Metagenomic study of the oral microbiota by Illumina high-throughput sequencing Lazarevic, Vladimir; Whiteson, Katrine; Huse, Susan; Hernandez, David; ... Francois, Patrice 2009
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Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage Rolain, Jean-Marc; Francois, Patrice; Hernandez, David; Bittar, Fadi; ... Raoult, Didier 2009
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Impact of oleic acid (cis-9-octadecenoic acid) on bacterial viability and biofilm production in Staphylococcus aureus Stenz, Ludwig; Francois, Patrice; Fischer, Adrien; Huyghe, Antoine; ... Schrenzel, Jacques 2008
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De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer Hernandez, David; Francois, Patrice; Farinelli, Laurent Luca Denis; Osteras, Magne; Schrenzel, Jacques 2008
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Stratégies d'optimisation combinatoire pour le problème de l'alignement local multiple sans indels, et application aux séquences protéiques Hernandez, David 2005