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 TitleAuthors / EditorsDate
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Phylogenetic cluster analysis identifies virological and behavioral drivers of HIV transmission in MSM. Bachmann, Nadine; Kusejko, Katharina; Nguyen, Huyen; Chaudron, Sandra E; ... Kouyos, Roger D 2020
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Resistance-associated substitutions in patients with chronic hepatitis C virus genotype 4 infection Dietz, Julia; Kalinina, Olga V; Vermehren, Johannes; Peiffer, Kai-Henrik; ... Sarrazin, Christoph 2020
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Seroprevalence of anti-SARS-CoV-2 IgG antibodies in Geneva, Switzerland (SEROCoV-POP): a population-based study Stringhini, Silvia; Wisniak, ania; Piumatti, Giovanni; Azman, Andrew S; ... Guessous, Idris 2020
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Validation of a commercially available SARS-CoV-2 serological immunoassay Meyer, Benjamin; Torriani, Giulia; Yerly Ferrillo, Sabine; Mazza, Léna; ... Kaiser, Laurent 2020
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Diagnostic accuracy of Augurix COVID-19 IgG serology rapid test Andrey, Diego Olivier; Cohen, Patrick; Meyer, Benjamin; Torriani, Giulia; ... Vuilleumier, Nicolas 2020
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SARS-CoV-2 viral load in the upper respiratory tract of children and adults with early acute COVID-19 Baggio, Stéphanie; L'Huillier, Arnaud; Yerly Ferrillo, Sabine; Bellon, Mathilde Anne; ... Eckerle, Isabella Anne 2020
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Validation and clinical evaluation of a SARS-CoV-2 surrogate virus neutralisation test (sVNT) Meyer, Benjamin; Reimerink, Johan; Torriani, Giulia; Brouwer, Fion; ... Reusken, Chantal 2020
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Identification of immunodominant linear epitopes from SARS-CoV-2 patient plasma Farrera Soler, Lluc; Daguer, Jean Pierre; Barluenga Badiola, Sofia; Vadas, Oscar; ... Winssinger, Nicolas 2020
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Emergence of drug resistance in the Swiss HIV Cohort Study under potent antiretroviral therapy is observed in socially disadvantaged patients Abela, Irene A; Scherrer, Alexandra U; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F 2020
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Head-to-head accuracy comparison of three commercial COVID-19 IgM/IgG serology rapid tests Andrey, Diego Olivier; Cohen, Patrick; Meyer, Benjamin; Torriani, Giulia; ... Vuilleumier, Nicolas 2020
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Epidemiological changes of acute/recent human immunodeficiency virus type 1 infection in Barcelona, Spain (1997-2015): a prospective cohort study Nicolás, D; Ambrosioni Czyrko, Juan; de Lazzari, E; Suarez, A; ... Miró, J M 2019
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Impact of the M184V/I Mutation on the efficacy of Abacavir/Lamivudine/Dolutegravir Therapy in HIV treatment-experienced patients Olearo, Flamina; Nguyen, Huyen Tran; Bonnet, Fabrice Henri Georges; Yerly Ferrillo, Sabine; ... Calmy, Alexandra 2019
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Comparison of analytical performances of the Roche Cobas 6800 CT/NG assay with the Abbott m2000 Real Time CT/NG assay for detecting Chlamydia trachomatis and Neisseria gonorrhoeae Cherkaoui, Abdessalam; Renzi, Gesuele; Mombelli, Michèle; Jaton, Katia; ... Schrenzel, Jacques 2019
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Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART. Bachmann, Nadine; von Siebenthal, Chantal; Vongrad, Valentina; Turk, Teja; ... Metzner, Karin J 2019
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The rate of mother-to-child transmission of antiretroviral drug-resistant HIV strains is low in the swiss mother and child HIV cohort study Compagno, Francesca; Naegele, Klaudia; Kahlert, Christian R; Hösli, Irene; ... Hirsch, Hans H 2019
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A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, noncommunicable diseases, and opportunistic diseases Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra Elisabeth; Nguyen, Huyen Tran; ... Kouyos, Roger D 2019
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Viral diversity based on next-generation sequencing of HIV-1 provides precise estimates of infection recency and time since infection Carlisle, Louisa A; Turk, Teja; Kusejko, Katharina; Metzner, Karin J; ... Kouyos, Roger D 2019
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HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected Nguyen, Huyen Tran; Thorball, Christian W; Fellay, Jacques; Böni, Jürg; ... Kouyos, Roger 2019
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The cumulative impact of harm reduction on the swiss HIV epidemic: cohort study, mathematical model, and phylogenetic analysis Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; ... Kouyos, Roger D 2018
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Stable HIV-1 reservoirs on dolutegravir maintenance monotherapy: the MONODO study Sculier, Delphine; Doco-Lecompte, T; Yerly Ferrillo, Sabine; Metzner, K J; ... Calmy, Alexandra 2018
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Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study Kusejko, Katharina; Kadelka, Claus; Marzel, Alex; Battegay, Manuel; ... Kouyos, Roger D 2018
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Time to overcome pretreatment HIV drug resistance Yerly Ferrillo, Sabine; Calmy, Alexandra 2018
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Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; ... Regoes, Roland R 2018
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Performance of genotypic algorithms for predicting tropism for HIV-1 CRF01_AE recombinant Soulie, C; Morand-Joubert, L; Cottalorda, J; Charpentier, C; ... Marcelin, A G 2018
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Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; ... Bonhoeffer, Sebastian 2018
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A community outbreak of Legionnaires' disease in Geneva, Switzerland, June to September 2017 Zanella, Marie-Céline; Yerly Ferrillo, Sabine; Cherkaoui, Abdessalam; Renzi, Gesuele; ... Kaiser, Laurent 2018
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Quantifying the drivers of HIV transmission and prevention in men who have sex with men: a population model-based analysis in Switzerland Kusejko, K; Marzel, A; Hampel, B; Bachmann, N; ... Kouyos, R D 2018
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Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; ... Trkola, Alexandra 2018
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Antiretroviral-treated HIV-1 patients can harbour resistant viruses in CSF despite an undetectable viral load in plasma Soulie, Cathia; Grudé, Maxime; Descamps, Diane; Amiel, Corinne; ... Marcelin, Anne-Geneviève 2017
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Mining for pairs: shared clinic visit dates identify steady HIV-positive partnerships Marzel, A; Shilaih, M; Turk, T; Campbell, N K; ... Kouyos, R D 2017
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Prevalence of HIV-1 drug resistance in treated patients with viral load >50 copies/mL: a 2014 French nationwide study Assoumou, L; Charpentier, C; Recordon-Pinson, P; Grudé, M; ... Reigadas, S 2017
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Role of Gag mutations in PI resistance in the Swiss HIV cohort study: bystanders or contributors? Kletenkov, K; Hoffmann, D; Böni, J; Yerly Ferrillo, Sabine; ... Klimkait, T 2017
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HIV-Positive-to-HIV-Positive Liver Transplantation Calmy, Alexandra; Van Delden, Christian; Giostra, Emiliano; Junet, C; ... Berney, Thierry 2016
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Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; ... Günthard, Huldrych F 2016
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Determinants of HIV-1 broadly neutralizing antibody induction Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; ... Trkola, Alexandra 2016
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A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; ... Brown, Andrew J Leigh 2016
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Large-scale inference of conjunctive Bayesian networks Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; ... Beerenwinkel, Niko 2016
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Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; ... Günthard, Huldrych F 2016
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Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; ... Kouyos, Roger 2016
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The global spread of HIV-1 subtype B epidemic Magiorkinis, Gkikas; Angelis, Konstantinos; Mamais, Ioannis; Katzourakis, Aris; ... Yerly Ferrillo, Sabine 2016
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Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; ... Günthard, Huldrych F 2016
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In Vivo Profiling and Distribution of Known and Novel Phase I and Phase II Metabolites of Efavirenz in Plasma, Urine, and Cerebrospinal Fluid Aouri, Manel; Barcelo, Catalina; Ternon, Béatrice; Cavassini, Matthias; ... Decosterd, Laurent A 2016
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Viral Escape in the Central Nervous System with Multidrug-Resistant Human Immunodeficiency Virus-1 Béguelin, C; Vázquez, M; Bertschi, M; Yerly Ferrillo, Sabine; ... Cusini, A 2016
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Corrigendum to "Dolutegravir-based antiretroviral therapy in a severely overweight child with a multi-drug resistant human immunodeficiency virus infection. A case report and review" [New Microbes New Infect] 6 (2015) 1-4] Wagner, Noémie; Wyler, Claire-Anne; Yerly Ferrillo, Sabine; Samer, Caroline Flora; ... Ambrosioni Czyrko, Juan 2015
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Dolutegravir-based antiretroviral therapy in a severely overweight child with a multidrug-resistant human immunodeficiency virus infection. A case report and review Wagner, Noémie; Wyler, Claire-Anne; Yerly Ferrillo, Sabine; Samer, Caroline Flora; ... Ambrosioni Czyrko, Juan 2015
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The effect of dose on the safety and immunogenicity of the VSV Ebola candidate vaccine: a randomised double-blind, placebo-controlled phase 1/2 trial Csaki Huttner, Angela; Dayer, Julie-Anne; Yerly Ferrillo, Sabine; Combescure, Christophe; ... Siegrist, Claire-Anne 2015
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Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report Schibler, Manuel; Vetter, Pauline; Cherpillod, Pascal; Petty, Tom J; ... Kaiser, Laurent 2015
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Antiretroviral-naive and -treated HIV-1 patients can harbour more resistant viruses in CSF than in plasma Soulie, Cathia; Descamps, Diane; Grudé, Maxime; Schneider, Véronique; ... Marcelin, Anne-Geneviève 2015
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Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds Yang, Wan-Lin; Kouyos, Roger D.; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F. 2015
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Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012 Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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