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A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, noncommunicable diseases, and opportunistic diseases Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra Elisabeth; Nguyen, Huyen Tran; ... Kouyos, Roger D 2019
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Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; ... Günthard, Huldrych F 2011
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Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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Changing trends in international versus domestic HCV transmission in HIV-positive MSM: A perspective for the DAA scale-up era Salazar-Vizcaya, Luisa; Kouyos, Roger D; Metzner, Karin J; Caraballo Cortes, Kamila; ... Rauch, Andri 2019
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Determinants of HIV-1 broadly neutralizing antibody induction Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; ... Trkola, Alexandra 2016
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Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART. Bachmann, Nadine; von Siebenthal, Chantal; Vongrad, Valentina; Turk, Teja; ... Metzner, Karin J 2019
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Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; ... Trkola, Alexandra 2018
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Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; ... Günthard, Huldrych F 2016
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Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals Shilaih, Mohaned; Marzel, Alex; Braun, Dominique L; Scherrer, Alexandra U; ... Kouyos, Roger D 2017
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HCV genetic diversity can be used to infer infection recency and time since infection Carlisle, Louisa A; Turk, Teja; Metzner, Karin J; Mbunkah, Herbert A; ... Kouyos, Roger D 2020
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Hepatitis C virus transmission among human immunodeficiency virus-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions Salazar-Vizcaya, Luisa; Kouyos, Roger D; Zahnd, Cindy; Wandeler, Gilles; ... Rauch, Andri 2016
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Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART. Wan, Chenjie; Bachmann, Nadine; Mitov, Venelin; Blanquart, François; ... Kouyos, Roger D 2020
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High Rates of Subsequent Asymptomatic Sexually Transmitted Infections and Risky Sexual Behavior in Patients Initially Presenting With Primary Human Immunodeficiency Virus-1 Infection Braun, Dominique L; Marzel, Alex; Steffens, Daniela; Schreiber, Peter W; ... Calmy, Alexandra 2018
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Higher risk of incident hepatitis C virus coinfection among men who have sex with men, in whom the HIV genetic bottleneck at transmission was wide Kouyos, Roger D; Rauch, Andri; Braun, Dominique L; Yang, Wan-Lin; ... Günthard, Huldrych F 2014
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Host genomics of the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment Thorball, Christian W; Borghesi, Alessandro; Bachmann, Nadine; Von Siebenthal, Chantal; ... Fellay, Jacques 2020
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Identifying and characterizing trans women in the swiss HIV Cohort Study as an epidemiologically distinct risk group Nguyen, Huyen; Hampel, Benjamin; Nuñez, David Garcia; Battegay, Manuel; ... Kusejko, Katharina 2021
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Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study Duran Ramirez, Jessy J; Ballouz, Tala; Nguyen, Huyen; Kusejko, Katharina; ... Kouyos, Roger D 2021
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Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study Kusejko, Katharina; Kadelka, Claus; Marzel, Alex; Battegay, Manuel; ... Kouyos, Roger D 2018
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Non-inferiority of simplified dolutegravir monotherapy compared to continued combination antiretroviral therapy that was initiated during primary HIV infection: a randomized, controlled, multi-site, open-label, non-inferiority trial Braun, Dominique L; Turk, Teja; Tschumi, Fabian; Grube, Christina; ... Günthard, Huldrych F 2019
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Phylogenetic cluster analysis identifies virological and behavioral drivers of HIV transmission in MSM. Bachmann, Nadine; Kusejko, Katharina; Nguyen, Huyen; Chaudron, Sandra E; ... Kouyos, Roger D 2020
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