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 TitleAuthors / EditorsDate
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 Comparison of analytical performances of the Roche Cobas 6800 CT/NG assay with the Abbott m2000 Real Time CT/NG assay for detecting Chlamydia trachomatis and Neisseria gonorrhoeae Cherkaoui, Abdessalam; Renzi, Gesuele; Mombelli, Michèle; Jaton, Katia; ... Schrenzel, Jacques 2019
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 Performance of genotypic algorithms for predicting tropism for HIV-1 CRF01_AE recombinant Soulie, C; Morand-Joubert, L; Cottalorda, J; Charpentier, C; ... Marcelin, A G 2018
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 A community outbreak of Legionnaires' disease in Geneva, Switzerland, June to September 2017 Zanella, Marie-Céline; Yerly Ferrillo, Sabine; Cherkaoui, Abdessalam; Renzi, Gesuele; ... Kaiser, Laurent 2018
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 Quantifying the drivers of HIV transmission and prevention in men who have sex with men: a population model-based analysis in Switzerland Kusejko, K; Marzel, A; Hampel, B; Bachmann, N; ... Kouyos, R D 2018
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 Time to overcome pretreatment HIV drug resistance Yerly Ferrillo, Sabine; Calmy, Alexandra 2018
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 Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; ... Regoes, Roland R 2018
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 Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; ... Bonhoeffer, Sebastian 2018
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 Antiretroviral-treated HIV-1 patients can harbour resistant viruses in CSF despite an undetectable viral load in plasma Soulie, Cathia; Grudé, Maxime; Descamps, Diane; Amiel, Corinne; ... Marcelin, Anne-Geneviève 2017
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 Prevalence of HIV-1 drug resistance in treated patients with viral load >50 copies/mL: a 2014 French nationwide study Assoumou, L; Charpentier, C; Recordon-Pinson, P; Grudé, M; ... Reigadas, S 2017
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 Role of Gag mutations in PI resistance in the Swiss HIV cohort study: bystanders or contributors? Kletenkov, K; Hoffmann, D; Böni, J; Yerly Ferrillo, Sabine; ... Klimkait, T 2017
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 Mining for pairs: shared clinic visit dates identify steady HIV-positive partnerships Marzel, A; Shilaih, M; Turk, T; Campbell, N K; ... Kouyos, R D 2017
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 Viral Escape in the Central Nervous System with Multidrug-Resistant Human Immunodeficiency Virus-1 Béguelin, C; Vázquez, M; Bertschi, M; Yerly Ferrillo, Sabine; ... Cusini, A 2016
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 HIV-Positive-to-HIV-Positive Liver Transplantation Calmy, Alexandra; Van Delden, Christian; Giostra, Emiliano; Junet, C; ... Berney, Thierry 2016
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 Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; ... Günthard, Huldrych F 2016
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 Determinants of HIV-1 broadly neutralizing antibody induction Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; ... Trkola, Alexandra 2016
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 A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; ... Brown, Andrew J Leigh 2016
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 Large-scale inference of conjunctive Bayesian networks Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; ... Beerenwinkel, Niko 2016
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 Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; ... Günthard, Huldrych F 2016
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 Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; ... Kouyos, Roger 2016
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 The global spread of HIV-1 subtype B epidemic Magiorkinis, Gkikas; Angelis, Konstantinos; Mamais, Ioannis; Katzourakis, Aris; ... Yerly Ferrillo, Sabine 2016
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 Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; ... Günthard, Huldrych F 2016
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 In Vivo Profiling and Distribution of Known and Novel Phase I and Phase II Metabolites of Efavirenz in Plasma, Urine, and Cerebrospinal Fluid Aouri, Manel; Barcelo, Catalina; Ternon, Béatrice; Cavassini, Matthias; ... Decosterd, Laurent A 2016
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 Decreasing Proportion of Recent Infections among Newly Diagnosed HIV-1 Cases in Switzerland, 2008 to 2013 Based on Line-Immunoassay-Based Algorithms Schüpbach, Jörg; Niederhauser, Christoph; Yerly Ferrillo, Sabine; Regenass, Stephan; ... Gebhardt, Martin D 2015
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 Aviremia 10 Years Postdiscontinuation of Antiretroviral Therapy Initiated During Primary Human Immunodeficiency Virus-1 Infection and Association With Gag-Specific T-Cell Responses Kinloch-de Loes, Sabine; Dorrell, Lucy; Yang, Hongbing; Hardy, Gareth A D; ... Johnson, Margaret A 2015
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 The effect of dose on the safety and immunogenicity of the VSV Ebola candidate vaccine: a randomised double-blind, placebo-controlled phase 1/2 trial Csaki Huttner, Angela; Dayer, Julie-Anne; Yerly Ferrillo, Sabine; Combescure, Christophe; ... Siegrist, Claire-Anne 2015
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 Antiretroviral-naive and -treated HIV-1 patients can harbour more resistant viruses in CSF than in plasma Soulie, Cathia; Descamps, Diane; Grudé, Maxime; Schneider, Véronique; ... Marcelin, Anne-Geneviève 2015
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 Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds Yang, Wan-Lin; Kouyos, Roger D.; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F. 2015
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 Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012 Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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 Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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 Dolutegravir-based antiretroviral therapy in a severely overweight child with a multidrug-resistant human immunodeficiency virus infection. A case report and review Wagner, Noémie; Wyler, Claire-Anne; Yerly Ferrillo, Sabine; Samer, Caroline Flora; ... Ambrosioni Czyrko, Juan 2015
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 Corrigendum to "Dolutegravir-based antiretroviral therapy in a severely overweight child with a multi-drug resistant human immunodeficiency virus infection. A case report and review" [New Microbes New Infect] 6 (2015) 1-4] Wagner, Noémie; Wyler, Claire-Anne; Yerly Ferrillo, Sabine; Samer, Caroline Flora; ... Ambrosioni Czyrko, Juan 2015
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 Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report Schibler, Manuel; Vetter, Pauline; Cherpillod, Pascal; Petty, Tom J; ... Kaiser, Laurent 2015
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 Treatment-Naive Individuals Are the Major Source of Transmitted HIV-1 Drug Resistance in Men Who Have Sex With Men in the Swiss HIV Cohort Study Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; ... Calmy, Alexandra 2014
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 Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland Avila, D.; Keiser, Olivia; Egger, M.; Kouyos, R.; ... Spycher, B. D. 2014
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 Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV Kouyos, R. D.; Rauch, Anna; Boni, Jose-Perol; Yerly Ferrillo, Sabine; ... Gunthard, H. F. 2014
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 Limited clinical benefit of minority K103N and Y181C-variant detection in addition to routine genotypic resistance testing in antiretroviral therapy-naive patients Metzner, Karin J; Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; ... Günthard, Huldrych F 2014
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 Viral escape in the CNS with multidrug-resistant HIV-1 Beguelin, Charles; Vazquez Rodriguez, Miriam; Bertschi, Manuel; Yerly Ferrillo, Sabine; ... Cusini, Alexia 2014
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 Generation of a recombinant Gag virus-like-particle panel for the evaluation of p24 antigen detection by diagnostic HIV tests Vetter, Beatrice N; Orlowski, Vanessa; Fransen, Katrien; Niederhauser, Christoph; ... Schüpbach, Jörg 2014
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 A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control Bartha, István; Carlson, Jonathan M; Brumme, Chanson J; McLaren, Paul J; ... Fellay, Jacques 2013
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 La prophylaxie postexposition dans tous ses états Wassilew, Nasstasja; El Amari, E Boffi; Bonfillon, Chantal; Yerly Ferrillo, Sabine; Calmy, Alexandra 2013
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 Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection Metzner, Karin J; Scherrer, Alexandra U; Preiswerk, Benjamin; Joos, Beda; ... Günthard, Huldrych F 2013
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 The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; ... Calmy, Alexandra 2013
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 Adherence as a Predictor of the Development of Class-Specific Resistance Mutations: The Swiss HIV Cohort Study von Wyl, Viktor; Klimkait, Thomas; Yerly Ferrillo, Sabine; Nicca, Dunja; ... Glass, Tracy R 2013
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 HIV-1 integrase variability and relationship with drug resistance in antiretroviral-naive and -experienced patients with different HIV-1 subtypes Reigadas, S; Marcelin, A G; Houssaïni, A; Yerly Ferrillo, Sabine; ... Masquelier, B 2013
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 Marked increase of the astrocytic marker S100B in the cerebrospinal fluid of HIV-infected patients on LPV/r-monotherapy Du Pasquier, Renaud Alfred Robert; Jilek, Samantha; Kalubi, Malela; Yerly Ferrillo, Sabine; ... Vernazza, Pietro L 2013
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 Higher CNS penetration-effectiveness of long-term combination antiretroviral therapy is associated with better HIV-1 viral suppression in cerebrospinal fluid Cusini, Alexia; Vernazza, Pietro L; Yerly Ferrillo, Sabine; Decosterd, Laurent A; ... Günthard, Huldyrich F 2013
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 Prevalence of HIV-1 drug resistance in treated patients with viral load >50 copies/mL in 2009: a French nationwide study Assoumou, Lambert; Descamps, Diane; Yerly Ferrillo, Sabine; Dos Santos, Georges; ... Masquelier, Bernard 2013
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 A cohort study of treatment-experienced HIV-1-infected patients treated with raltegravir: factors associated with virological response and mutations selected at failure Marcelin, Anne-Geneviève; Delaugerre, Constance; Beaudoux, Céline; Descamps, Diane; ... Flandre, Philippe 2013
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 Simple Estimation of Incident HIV Infection Rates in Notification Cohorts Based on Window Periods of Algorithms for Evaluation of Line-Immunoassay Result Patterns Schüpbach, Jörg; Gebhardt, Martin D.; Scherrer, Alexandra U.; Bisset, Leslie R.; ... Günthard, Huldrych F. 2013
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 Minor protease inhibitor mutations at baseline do not increase the risk for a virological failure in HIV-1 subtype B infected patients Scherrer, Alexandra U; Ledergerber, Bruno; von Wyl, Viktor; Böni, Jürg; ... Günthard, Huldrych F 2012
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