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 TitleAuthors / EditorsDate
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 Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; ... Regoes, Roland R 2018
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 Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics Kühnert, Denise; Kouyos, Roger; Shirreff, George; Pečerska, Jūlija; ... Bonhoeffer, Sebastian 2018
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 Role of Gag mutations in PI resistance in the Swiss HIV cohort study: bystanders or contributors? Kletenkov, K; Hoffmann, D; Böni, J; Yerly Ferrillo, Sabine; ... Klimkait, T 2017
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 Late hepatitis B reactivation following direct-acting antiviral-based treatment of recurrent hepatitis C in an anti-HBc-positive liver transplant recipient Vionnet, Julien; Pascual, Manuel; Testoni, Barbara; Combet, Christophe; ... Moradpour, Darius 2017
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 Mining for pairs: shared clinic visit dates identify steady HIV-positive partnerships Marzel, A; Shilaih, M; Turk, T; Campbell, N K; ... Kouyos, R D 2017
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 A Systematic Review and Meta-Analysis of HCV Clearance Gauthiez, Emeline; Habfast-Robertson, Ines; Rüeger, Sina; Kutalik, Zoltan; ... Bochud, Pierre-Yves 2017
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 Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; ... Günthard, Huldrych F 2016
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 Determinants of HIV-1 broadly neutralizing antibody induction Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; ... Trkola, Alexandra 2016
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 A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland Ragonnet-Cronin, Manon L; Shilaih, Mohaned; Günthard, Huldrych F; Hodcroft, Emma B; ... Brown, Andrew J Leigh 2016
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 Large-scale inference of conjunctive Bayesian networks Montazeri, Hesam; Kuipers, Jack; Kouyos, Roger; Böni, Jürg; ... Beerenwinkel, Niko 2016
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 Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs Oberle, Corinna S; Joos, Beda; Rusert, Peter; Campbell, Nottania K; ... Günthard, Huldrych F 2016
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 Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland Shilaih, Mohaned; Marzel, Alex; Yang, Wan Lin; Scherrer, Alexandra U; ... Kouyos, Roger 2016
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 Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; ... Günthard, Huldrych F 2016
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 Decreasing Proportion of Recent Infections among Newly Diagnosed HIV-1 Cases in Switzerland, 2008 to 2013 Based on Line-Immunoassay-Based Algorithms Schüpbach, Jörg; Niederhauser, Christoph; Yerly Ferrillo, Sabine; Regenass, Stephan; ... Gebhardt, Martin D 2015
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 Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds Yang, Wan-Lin; Kouyos, Roger D.; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F. 2015
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 Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012 Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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 Corrigendum: reduced IFNλ4 activity is associated with improved HCV clearance and reduced expression of interferon-stimulated genes Terczyńska-Dyla, Ewa; Bibert, Stéphanie; Duong, Francois H T; Krol, Ilona; ... Bochud, Pierre-Yves 2015
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 Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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 Treatment-Naive Individuals Are the Major Source of Transmitted HIV-1 Drug Resistance in Men Who Have Sex With Men in the Swiss HIV Cohort Study Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; ... Calmy, Alexandra 2014
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 Social Meets Molecular: Combining Phylogenetic and Latent Class Analyses to Understand HIV-1 Transmission in Switzerland Avila, D.; Keiser, Olivia; Egger, M.; Kouyos, R.; ... Spycher, B. D. 2014
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 Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV Kouyos, R. D.; Rauch, Anna; Boni, Jose-Perol; Yerly Ferrillo, Sabine; ... Gunthard, H. F. 2014
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 Novel Approach Identifies SNPs in SLC2A10 and KCNK9 with Evidence for Parent-of-Origin Effect on Body Mass Index Hoggart, Clive J; Ehret, Georg Benedikt; Bochud, Pierre-Yves; Aubert, Vincent; ... Bochud, Murielle 2014
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 Higher risk of incident hepatitis C virus coinfection among men who have sex with men, in whom the HIV genetic bottleneck at transmission was wide Kouyos, Roger D; Rauch, Andri; Braun, Dominique L; Yang, Wan-Lin; ... Günthard, Huldrych F 2014
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 Limited clinical benefit of minority K103N and Y181C-variant detection in addition to routine genotypic resistance testing in antiretroviral therapy-naive patients Metzner, Karin J; Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; ... Günthard, Huldrych F 2014
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 Generation of a recombinant Gag virus-like-particle panel for the evaluation of p24 antigen detection by diagnostic HIV tests Vetter, Beatrice N; Orlowski, Vanessa; Fransen, Katrien; Niederhauser, Christoph; ... Schüpbach, Jörg 2014
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 Reduced IFNλ4 activity is associated with improved HCV clearance and reduced expression of interferon-stimulated genes Terczyńska-Dyla, Ewa; Bibert, Stéphanie; Duong, Francois H T; Krol, Ilona; ... Hartmann, Rune 2014
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 Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection Metzner, Karin J; Scherrer, Alexandra U; Preiswerk, Benjamin; Joos, Beda; ... Günthard, Huldrych F 2013
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 Adherence as a Predictor of the Development of Class-Specific Resistance Mutations: The Swiss HIV Cohort Study von Wyl, Viktor; Klimkait, Thomas; Yerly Ferrillo, Sabine; Nicca, Dunja; ... Glass, Tracy R 2013
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 Simple Estimation of Incident HIV Infection Rates in Notification Cohorts Based on Window Periods of Algorithms for Evaluation of Line-Immunoassay Result Patterns Schüpbach, Jörg; Gebhardt, Martin D.; Scherrer, Alexandra U.; Bisset, Leslie R.; ... Günthard, Huldrych F. 2013
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 Long-lasting protection of activity of nucleoside reverse transcriptase inhibitors and protease inhibitors (PIs) by boosted PI containing regimens Scherrer, Alexandra U; Böni, Jürg; Yerly Ferrillo, Sabine; Klimkait, Thomas; ... Günthard, Huldrych F 2012
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 Anti-HLA antibody repertoire after IVIg infusion in highly sensitized patients waiting for kidney transplantation Ferrari-Lacraz, Sylvie; Aubert, Vincent; Buehler, Leo Hans; Pascual, Manuel Antonio; ... Villard, Jean 2006