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Repeated syphilis episodes in HIV-infected men who have sex with men: a multicenter prospective cohort study on risk factors and the potential role of syphilis immunity Roth, Jan A; Franzeck, Fabian C; Balakrishna, Suraj; Lautenschlager, Stephan; ... Battegay, Manuel 2020
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Phylogenetic cluster analysis identifies virological and behavioral drivers of HIV transmission in MSM. Bachmann, Nadine; Kusejko, Katharina; Nguyen, Huyen; Chaudron, Sandra E; ... Kouyos, Roger D 2020
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HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected Nguyen, Huyen Tran; Thorball, Christian W; Fellay, Jacques; Böni, Jürg; ... Kouyos, Roger 2019
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The rate of mother-to-child transmission of antiretroviral drug-resistant HIV strains is low in the swiss mother and child HIV cohort study Compagno, Francesca; Naegele, Klaudia; Kahlert, Christian R; Hösli, Irene; ... Hirsch, Hans H 2019
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Viral diversity based on next-generation sequencing of HIV-1 provides precise estimates of infection recency and time since infection Carlisle, Louisa A; Turk, Teja; Kusejko, Katharina; Metzner, Karin J; ... Kouyos, Roger D 2019
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Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART. Bachmann, Nadine; von Siebenthal, Chantal; Vongrad, Valentina; Turk, Teja; ... Metzner, Karin J 2019
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A systematic phylogenetic approach to study the interaction of HIV-1 with coinfections, noncommunicable diseases, and opportunistic diseases Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra Elisabeth; Nguyen, Huyen Tran; ... Kouyos, Roger D 2019
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Antibodies against HPV16E6 oncoprotein in the Swiss HIV cohort study: Kinetics and anal cancer risk prediction Combes, Jean-Damien; Clifford, Gary M; Günthard, Huldrych F; Hauser, Christoph; ... Scherrer, Alexandra U 2019
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Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity Bertels, Frederic; Marzel, Alex; Leventhal, Gabriel; Mitov, Venelin; ... Regoes, Roland R 2018
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Lipodystrophy Increases the Risk of CKD Development in HIV-Positive Patients in Switzerland: The LIPOKID Study Bouatou, Yassine; Gayet-Ageron, Angèle; Bernasconi, Enos; Battegay, Manuel; ... Calmy, Alexandra 2018
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Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity Kadelka, Claus; Liechti, Thomas; Ebner, Hanna; Schanz, Merle; ... Trkola, Alexandra 2018
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Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study Kusejko, Katharina; Kadelka, Claus; Marzel, Alex; Battegay, Manuel; ... Kouyos, Roger D 2018
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Life expectancy in HIV-positive persons in Switzerland: matched comparison with general population Gueler, Aysel; Moser, André; Calmy, Alexandra; Günthard, Huldrych F; ... Egger, Matthias 2017
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Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study Beguelin, Charles; Friolet, Nicole; Moradpour, Darius; Sahli, Roland; ... Wandeler, Gilles 2017
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Hepatitis delta-associated mortality in HIV/HBV-coinfected patients Beguelin, Charles; Moradpour, Darius; Sahli, Roland; Suter-Riniker, Franziska; ... Wandeler, Gilles 2017
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Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals Shilaih, Mohaned; Marzel, Alex; Braun, Dominique L; Scherrer, Alexandra U; ... Kouyos, Roger D 2017
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Rilpivirine use in the Swiss HIV cohort study: a prospective cohort study Sculier, Delphine; Gayet-Ageron, Angèle; Battegay, Manuel; Cavassini, Matthias; ... Calmy, Alexandra 2017
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Adverse events of raltegravir and dolutegravir Elzi, Luigia; Erb, Stefan; Furrer, Hansjakob; Cavassini, Matthias; ... Battegay, Manuel 2017
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Infections chez les réfugiés adultes Notter, Julia; Labhardt, Niklaus; Hatz, Christophe; Wallnofer, Astrid; ... Tarr, Philipp 2016
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Liver fibrosis in treatment-naïve HIV-infected and HIV/HBV co-infected patients: Zambia and Switzerland compared Wandeler, Gilles; Mulenga, Lloyd; Vinikoor, Michael J; Kovari, Helen; ... Rauch, Andri 2016
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Determinants of HIV-1 broadly neutralizing antibody induction Rusert, Peter; Kouyos, Roger D; Kadelka, Claus; Ebner, Hanna; ... Trkola, Alexandra 2016
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Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study Scherrer, Alexandra U; Yang, Wan-Lin; Kouyos, Roger D; Böni, Jürg; ... Günthard, Huldrych F 2016
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Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis Scherrer, Alexandra U; von Wyl, Viktor; Yang, Wan-Lin; Kouyos, Roger D; ... Günthard, Huldrych F 2016
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Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence Country Stucki, David; Ballif, Marie; Egger, Matthias; Furrer, Hansjakob; ... Fenner, Lukas 2016
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Hepatitis C virus transmission among human immunodeficiency virus-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions Salazar-Vizcaya, Luisa; Kouyos, Roger D; Zahnd, Cindy; Wandeler, Gilles; ... Rauch, Andri 2016
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Vaccinations chez les réfugiés adultes Tarr, Philippe; Notter, Julia; Sydow, Veronica; Wirz, Sebastian; ... Martin, Brian 2016
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Strong Impact of Smoking on Multimorbidity and Cardiovascular Risk Among Human Immunodeficiency Virus-Infected Individuals in Comparison With the General Population Hasse, Barbara; Tarr, Philip E; Marques-Vidal, Pedro; Waeber, Gerard; ... Martinetti, Gregory 2015
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Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study Yang, Wan-Lin; Kouyos, Roger D; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012 Yang, Wan-Lin; Kouyos, Roger; Scherrer, Alexandra U; Böni, Jürg; ... Günthard, Huldrych F 2015
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Treatment-Naive Individuals Are the Major Source of Transmitted HIV-1 Drug Resistance in Men Who Have Sex With Men in the Swiss HIV Cohort Study Drescher, Sara M; von Wyl, Viktor; Yang, Wan-Lin; Böni, Jürg; ... Calmy, Alexandra 2014
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Disentangling human tolerance and resistance against HIV. Regoes, Roland R; McLaren, Paul J; Battegay, Manuel; Bernasconi, Enos; ... Fellay, Jacques 2014
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Higher risk of incident hepatitis C virus coinfection among men who have sex with men, in whom the HIV genetic bottleneck at transmission was wide Kouyos, Roger D; Rauch, Andri; Braun, Dominique L; Yang, Wan-Lin; ... Günthard, Huldrych F 2014
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Co-trimoxazole prophylaxis is associated with reduced risk of incident tuberculosis in participants in the Swiss HIV Cohort Study Hasse, Barbara; Walker, A Sarah; Fehr, Jan; Furrer, Hansjakob; ... Ledergerber, Bruno 2014
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Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection Metzner, Karin J; Scherrer, Alexandra U; Preiswerk, Benjamin; Joos, Beda; ... Günthard, Huldrych F 2013
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Association of Alcohol Consumption and HIV Surrogate Markers in Participants of the Swiss HIV Cohort Study Conen, Anna; Wang, Qing; Glass, Tracy R; Fux, Christoph A; ... Fehr, Jan 2013
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Hepatitis B virus infection is associated with impaired immunological recovery during antiretroviral therapy in the Swiss HIV cohort study Wandeler, Gilles; Gsponer, Thomas; Bihl, Florian; Bernasconi, Enos; ... Rauch, Andri 2013
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The individualized genetic barrier predicts treatment response in a large cohort of HIV-1 infected patients Beerenwinkel, Niko; Montazeri, Hesam; Schuhmacher, Heike; Knupfer, Patrick; ... Calmy, Alexandra 2013
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HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis Fenner, Lukas; Egger, Matthias; Bodmer, Thomas; Furrer, Hansjakob; ... Gagneux, Sebastien 2013
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Risk of cardiovascular events and blood pressure control in hypertensive HIV-infected patients: Swiss HIV Cohort Study (SHCS) Nüesch, Reto; Wang, Qing; Elzi, Luigia; Bernasconi, Enos; ... Bucher, Heiner C 2013
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Renal function in patients with HIV starting therapy with tenofovir and either efavirenz, lopinavir or atazanavir Young, Jim; Schäfer, Juliane; Fux, Christoph A; Furrer, Hansjakob; ... Bucher, Heiner C 2012
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Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations von Wyl, Viktor; Yerly Ferrillo, Sabine; Böni, Jürg; Shah, Cyril; ... Günthard, Huldrych F 2012
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Mycobacterium tuberculosis transmission in a country with low tuberculosis incidence: role of immigration and HIV infection Fenner, Lukas; Gagneux, Sebastien; Helbling, Peter; Battegay, Manuel; ... Egger, Matthias 2012
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Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection Kouyos, Roger D; von Wyl, Viktor; Yerly, Sabine; Böni, Jürg; ... Günthard, Huldrych F 2011
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Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals: the Swiss HIV Cohort Study Fehr, Jan; Glass, Tracy R; Louvel, Séverine; Hamy, François; ... Klimkait, Thomas 2011
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Viral suppression rates in salvage treatment with raltegravir improved with the administration of genotypic partially active or inactive nucleoside/tide reverse transcriptase inhibitors Scherrer, Alexandra U; von Wyl, Viktor; Böni, Jürg; Yerly Ferrillo, Sabine; ... Günthard, Huldrych F 2011
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Systemic antibody responses to gut commensal bacteria during chronic HIV-1 infection Haas, Anna; Zimmermann, Kathrin; Graw, Frederik; Slack, Emma; ... Oxenius, Annette 2011
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Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study Rauch, Andri; Kutalik, Zoltan; Descombes, Patrick; Cai, Tao; ... Bochud, Pierre-Yves 2010
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Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland Kouyos, R. D.; von Wyl, Viktor; Yerly Ferrillo, Sabine; Boni, Jurg; ... Gunthard, Huldrych 2010
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Incidence and risk factors for chronic elevation of alanine aminotransferase levels in HIV-infected persons without hepatitis b or c virus co-infection Kovari, Helen; Ledergerber, Bruno; Battegay, Manuel; Rauch, Andri; ... Weber, Rainer 2010
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Treatment modification in human immunodeficiency virus-infected individuals starting combination antiretroviral therapy between 2005 and 2008 Elzi, Luigia; Marzolini, Catia; Furrer, Hansjakob; Ledergerber, Bruno; ... Battegay, Manuel 2010
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