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Viral sequences detection by high-throughput sequencing in cerebrospinal fluid of individuals with and without central nervous system disease Schibler, Manuel; Brito, Francisco; Zanella, Marie-Céline; Zdobnov, Evgeny; ... Kaiser, Laurent 2019
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VectorBase: a home for invertebrate vectors of human pathogens Lawson, Daniel; Arensburger, Peter; Atkinson, Peter; Besansky, N. J.; ... Collins, F. H. 2007
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Using BUSCO to Assess Insect Genomic Resources Waterhouse, Robert M; Seppey, Mathieu; Simao Neto, Felipe; Zdobnov, Evgeny 2019
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Understanding key features of bacterial restriction-modification systems through quantitative modeling Rodic, Andjela; Blagojevic, Bojana; Zdobnov, Evgeny; Djordjevic, Magdalena; Djordjevic, Marko 2017
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Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses Cordey, Samuel; Bel, Michael; Petty Ii, Thomas John; Docquier, Mylene; ... Kaiser, Laurent 2015
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Three-dimensional model for slipped loop RNA. Farutin, V A; Gorin, A A; Zdobnov, Evgeny; Ivanov, V I 1997
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The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases Zdobnov, Evgeny 2016
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The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell Junier, Thomas; Zdobnov, Evgeny 2010
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The InterPro database, an integrated documentation resource for protein families, domains and functional sites Apweiler, Rolf; Attwood, Teresa K; Bairoch, Amos Marc; Bateman, Alex; ... Zdobnov, Evgeny 2001
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The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection Yerly Ferrillo, Sabine; Junier, Thomas; Gayet-Ageron, Angèle; Boffi El Amari, Emmanuelle Jane; ... Kaiser, Laurent 2009
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The EBI SRS server - recent developments Zdobnov, Evgeny; Lopez, Rodrigo; Apweiler, Rolf; Etzold, Thure 2002
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The EBI SRS server - new features Zdobnov, Evgeny; Lopez, Rodrigo; Apweiler, Rolf; Etzold, Thure 2002
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The cis-acting replication elements define human enterovirus and rhinovirus species Cordey, Samuel; Gerlach, Daniel; Junier, Thomas; Zdobnov, Evgeny; ... Tapparel, Caroline 2008
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The bovine lactation genome: insights into the evolution of mammalian milk Lemay, Danielle G.; Lynn, David J.; Martin, William F.; Neville, Margaret C.; ... Rijnkels, Monique 2009
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The Aedes aegypti genome: a comparative perspective Waterhouse, R. M.; Wyder, Stefan; Zdobnov, Evgeny 2008
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Sociality is linked to rates of protein evolution in a highly social insect Hunt, B. G.; Wyder, Stefan; Elango, Navin; Werren, J. H.; ... Goodisman, M. A. 2010
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Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality Simola, Daniel F; Wissler, Lothar; Donahue, Greg; Waterhouse, Robert; ... Zdobnov, Evgeny 2013
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Social evolution. Genomic signatures of evolutionary transitions from solitary to group living Kapheim, K. M.; Waterhouse, Robert; Zdobnov, Evgeny 2015
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Sertoli cell Dicer is essential for spermatogenesis in mice Papaioannou, Maria-Eleni; Pitetti, Jean-Luc; Ro, Seungil; Park, Chanjae; ... Nef, Serge 2009
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Scoring Targets of Transcription in Bacteria Rather than Focusing on Individual Binding Sites Djordjevic, Marko; Djordjevic, Magdalena; Zdobnov, Evgeny 2017
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Rhinovirus genome variation during chronic upper and lower respiratory tract infections Tapparel, Caroline; Cordey, Samuel; Junier, Thomas; Farinelli, Laurent Luca Denis; ... Kaiser, Laurent 2011
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Rhinovirus genome evolution during experimental human infection Cordey, Samuel; Junier, Thomas; Gerlach, Daniel; Gobbini, Francesca; ... Kaiser, Laurent 2010
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Quantification of ortholog losses in insects and vertebrates Wyder, Stefan; Kriventseva, E. V.; Schroder, Reinhard; Kadowaki, Tatsuhiko; Zdobnov, Evgeny 2007
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Quantification of insect genome divergence Zdobnov, Evgeny; Bork, Peer 2007
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Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes Apweiler, R; Biswas, M; Fleischmann, W; Kanapin, A; ... Zdobnov, Evgeny 2001
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Protein coding potential of retroviruses and other transposable elements in vertebrate genomes Zdobnov, Evgeny; Campillos, Mónica; Harrington, Eoghan D; Torrents, David; Bork, Peer 2005
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Propagation of respiratory viruses in human airway epithelia reveals persistent virus-specific signatures Essaidi, Manel; Brito, Francisco; Benaoudia, Sacha; Royston, Lena; ... Tapparel, Caroline 2017
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Pathogenomics of Culex quinquefasciatus and meta-analysis of infection responses to diverse pathogens Bartholomay, Lyric C.; Waterhouse, Robert; Mayhew, George F.; Campbell, Corey L.; ... Muskavitch, Marc A. T. 2010
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Overgrowth caused by misexpression of a microRNA with dispensable wild-type function Nairz, Knud; Rottig, Carmen; Rintelen, Felix; Zdobnov, Evgeny; ... Hafen, Ernst 2006
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OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 Waterhouse, Robert; Zdobnov, Evgeny; Tegenfeldt, Fredrik; Li, Jia; Kriventseva, Evgenia 2011
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OrthoDB: the hierarchical catalog of eukaryotic orthologs Kriventseva, Evgenia; Rahman, Nazim; Espinosa, Octavio; Zdobnov, Evgeny 2008
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OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs Waterhouse, Robert; Tegenfeldt, Fredrik; Li, Jia; Zdobnov, Evgeny; Kriventseva, Evgenia 2013
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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs Zdobnov, Evgeny; Tegenfeldt, Fredrik; Kuznetsov, D; Waterhouse, Robert; ... Kriventseva, Evgenia 2017
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OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software Kriventseva, Evgenia; Tegenfeldt, Fredrik; Petty, Tom; Waterhouse, Robert; ... Zdobnov, Evgeny 2015
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OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs Kriventseva, Evgenia; Kouznetsov, Dimitri; Tegenfeldt, Fredrik; Manni, Mose; ... Zdobnov, Evgeny 2019
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New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses Tapparel, Caroline; Junier, Thomas; Gerlach, Daniel; Van-Belle, Sandra; ... Kaiser, Laurent 2009
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New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features Tapparel, Caroline; Junier, Thomas; Gerlach, Daniel; Cordey, Samuel; ... Kaiser, Laurent 2007
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Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome Panfilio, Kristen A; Vargas Jentzsch, Iris M; Benoit, Joshua B; Erezyilmaz, Deniz; ... Richards, Stephen 2019
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miROrtho: computational survey of microRNA genes Gerlach, Daniel; Kriventseva, Evgenia; Rahman, Nazim; Vejnar, Charles; Zdobnov, Evgeny 2009
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MiRmap: comprehensive prediction of microRNA target repression strength Vejnar, Charles; Zdobnov, Evgeny 2012
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miRmap web: Comprehensive microRNA target prediction online Vejnar, Charles; Blum, Matthias; Zdobnov, Evgeny 2013
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Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank Brito, Francisco; Cordey, Samuel; Delwart, Eric; Deng, Xutao; ... Preynat-Seauve, Olivier 2018
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Metagenomics analysis of red blood cell and fresh-frozen plasma units Lau, Pierre; Cordey, Samuel; Brito, Francisco; Tirefort, Diderik; ... Preynat-Seauve, Olivier 2017
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Mapping of small RNAs in the human ENCODE regions Borel, Christelle; Gagnebin, Maryline; Gehrig, Corinne; Kriventseva, Evgenia; ... Antonarakis, Stylianos 2008
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Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions Anstead, Clare A.; Korhonen, Pasi K.; Young, Neil D.; Hall, Ross S.; ... Gasser, Robin B. 2015
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Loss of Dicer in Sertoli cells has a major impact on the testicular proteome of mice Papaioannou, Marilena D; Lagarrigue, Mélanie; Vejnar, Charles; Rolland, Antoine D; ... Nef, Serge 2011
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Life cycle transcriptome of the malaria mosquito Anopheles gambiae and comparison with the fruitfly Drosophila melanogaster Koutsos, A. C.; Blass, Claudia; Meister, Stephan; Schmidt, Sabine; ... Christophides, G. K. 2007
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InterProScan--an integration platform for the signature-recognition methods in InterPro Zdobnov, Evgeny; Apweiler, Rolf 2001
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InterPro--an integrated documentation resource for protein families, domains and functional sites Apweiler, R; Attwood, T K; Bairoch, Amos Marc; Bateman, A; ... Zdobnov, Evgeny 2000
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Interactive InterPro-based comparisons of proteins in whole genomes Kanapin, A; Apweiler, R; Biswas, M; Fleischmann, W; ... Zdobnov, Evgeny 2002
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