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A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus Charbonnier, Yvan; Gettler, Brian; Francois, Patrice; Bento, Manuela; ... Schrenzel, Jacques 2005
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A global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells Garzoni, Christian; Francois, Patrice; Huyghe, Antoine; Couzinet, Sabine; ... Schrenzel, Jacques 2007
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A high-resolution anatomical atlas of the transcriptome in the mouse embryo Diez-Roux, Graciana 2011
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A mouse embryonic stem cell bank for inducible overexpression of human chromosome 21 genes De Cegli, Rossella; Romito, Antonio; Iacobacci, Simona; Mao, Lei; ... Cobellis, G. 2010
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A SAGA-independent function of SPT3 mediates transcriptional deregulation in a mutant of the Ccr4-not complex in Saccharomyces cerevisiae James, Nicole; Landrieux, Emilie; Collart, Martine 2007
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A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation Geissmann, Thomas; Chevalier, Clement; Cros, Marie-Josee; Boisset, Sandrine; ... Romby, Pascale 2009
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A Signaling Lipid Associated with Alzheimer's Disease Promotes Mitochondrial Dysfunction Kennedy, Michael A; Moffat, Tia C; Gable, Kenneth; Ganesan, Suriakarthiga; ... Baetz, Kristin 2016
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A two-stage meta-analysis identifies several new loci for Parkinson's disease French Parkinson's Disease Genetics Study Group 2011
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Alpha cell-specific Men1 ablation triggers the transdifferentiation of glucagon-expressing cells and insulinoma development Lu, Jieli; Herrera, Pedro Luis; Carreira, Christine; Bonnavion, Remy; ... Zhang, C. X. 2010
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Altered apolipoprotein D expression in the brain of patients with Alzheimer disease Belloir, Bénédicte; Kovari, Eniko Veronika; Surini-Demiri, M; Savioz, Armand 2001
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Alternative Splicing QTLs in European and African Populations Ongen, Halit; Dermitzakis, Emmanouil 2015
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An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits Hsu, Yi-Hsiang; Zillikens, M Carola; Wilson, Scott G.; Farber, Charles R.; ... Kiel, D. P. 2010
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ApoC-I and ApoC-III as potential plasmatic markers to distinguish between ischemic and hemorrhagic stroke Allard, Laure; Lescuyer, Pierre; Burgess, Jennifer; Leung, Kit-Yi; ... Sanchez, Jean-Charles 2004
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Assessment of transcript reconstruction methods for RNA-seq Steijger, Tamara; Abril, Josep F; Engström, Pär G; Kokocinski, Felix; ... Antonarakis, Stylianos 2013
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Beta-arrestin2 regulates parathyroid hormone effects on a p38 MAPK and NFkappaB gene expression network in osteoblasts Bianchi, Estelle; Ferrari, Serge Livio 2009
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Bidirectional promoters generate pervasive transcription in yeast Xu, Zhenyu; Wei, Wu; Gagneur, Julien; Perocchi, Fabiana; ... Steinmetz, Lars M 2009
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Blockade of T cell contact-activation of human monocytes by high-density lipoproteins reveals a new pattern of cytokine and inflammatory genes Gruaz, Lyssia; Delucinge-Vivier, Celine; Descombes, Patrick; Dayer, Jean-Michel; Burger, Danielle 2010
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Bone morphogenetic protein 3 controls insulin gene expression and is down-regulated in INS-1 cells inducibly expressing a hepatocyte nuclear factor 1A-maturity-onset diabetes of the young mutation Bonner, Caroline; Farrelly, Angela M; Concannon, Caoimhín G; Dussmann, Heiko; ... Prehn, Jochen H M 2011
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Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions Beaume, Marie-Emilie; Hernandez, David; Farinelli, Laurent Luca Denis; Deluen, Cecile; ... Francois, Patrice 2010
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Chronic obstructive pulmonary disease-specific gene expression signatures of alveolar macrophages as well as peripheral blood monocytes overlap and correlate with lung function Poliska, Szilard; Csanky, Eszter; Szanto, Attila; Szatmari, Istvan; ... Nagy, Laszlo 2011
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CodY in Staphylococcus aureus: a regulatory link between metabolism and virulence gene expression Pohl, Konstanze; Francois, Patrice; Stenz, Ludwig; Schlink, Frank; ... Wolz, Christiane 2009
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Combined hepatocellular-cholangiocarcinomas exhibit progenitor features and activation of Wnt and TGFβ signaling pathways Coulouarn, Cédric; Cavard, Catherine; Rubbia-Brandt, Laura; Audebourg, Anne; ... Terris, Benoît 2012
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Common regulatory variation impacts gene expression in a cell type-dependent manner Dimas, Antigone S.; Deutsch, Samuel; Stranger, Barbara E.; Montgomery, Stephen; ... Antonarakis, Stylianos 2009
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Comparative genomics in Chlamydomonas and Plasmodium identifies an ancient nuclear envelope protein family essential for sexual reproduction in protists, fungi, plants, and vertebrates Ning, Jue; Otto, Thomas D; Pfander, Claudia; Schwach, Frank; ... Snell, William J 2013
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Comparison of gene expression patterns among Leishmania braziliensis clinical isolates showing a different in vitro susceptibility to pentavalent antimony Adaui, V; Schnorbusch, K; Zimic, M; Gutiérrez, A; ... Dujardin, J-C 2011
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Context-specific α- to-β-cell reprogramming by forced Pdx1 expression Yang, Yu-Ping; Thorel, Fabrizio; Boyer, Daniel F; Herrera, Pedro Luis; Wright, Christopher V E 2011
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Coordinated regulation by AgrA, SarA, and SarR to control agr expression in Staphylococcus aureus Reyes, Dindo; Andrey, Diego Olivier; Monod, Antoinette; Kelley, William; ... Cheung, Ambrose L. 2011
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Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach Fischer, Adrien; Yang, Soo-Jin; Bayer, Arnold S; Vaezzadeh, Ali R; ... Francois, Patrice 2011
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Discovery of Plasmodium modulators by genome-wide analysis of circulating hemocytes in Anopheles gambiae Pinto, Sofia B; Lombardo, Fabrizio; Koutsos, Anastasios C; Waterhouse, Robert; ... Michel, Kristin 2009
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Distinct clinical phenotypes associated with JAK2V617F reflect differential STAT1 signaling Chen, Edwin; Beer, Philip A.; Godfrey, Anna L.; Ortmann, Christina A.; ... Green, Anthony R. 2010
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Down-regulation of ECRG4, a candidate tumor suppressor gene, in human breast cancer Sabatier, Renaud; Finetti, Pascal; Adelaide, José; Guille, Arnaud; ... Bertucci, François 2011
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Early activation of the fatty acid metabolism pathway by chronic high glucose exposure in rat insulin secretory beta-cells Coute, Yohann; Brunner, Yannick; Schvartz, Domitille; Hernandez, Celine; ... Sanchez, Jean-Charles 2010
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Early metabolic defects in dexamethasone-exposed and undernourished intrauterine growth restricted rats Somm, Emmanuel; Vauthay, Delphine; Guerardel, Audrey; Toulotte, Audrey; ... Schwitzgebel Luscher, Valérie 2012
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Ectopic gene expression and organogenesis in Arabidopsis mutants missing BRU1 required for genome maintenance Ohno, Yusuke; Narangajavana, Jarunya; Yamamoto, Akiko; Hattori, Tsukaho; ... Takeda, Shin 2011
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Effect of a glucose impulse on the CcpA regulon in Staphylococcus aureus Seidl, Kati; Muller, Susanne; Francois, Patrice; Kriebitzsch, Carsten; ... Berger-Bachi, Brigitte 2009
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Epigenetic features of human mesenchymal stem cells determine their permissiveness for induction of relevant transcriptional changes by SYT-SSX1 Cironi, Luisa; Provero, Paolo; Riggi, Nicola; Janiszewska, Michalina; ... Stamenkovic, Ivan 2009
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Epistatic selection between coding and regulatory variation in human evolution and disease Lappalainen, Tuuli Emilia; Montgomery, Stephen; Nica, Alexandra; Dermitzakis, Emmanouil 2011
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Essential impact of NF-kappaB signaling on the H5N1 influenza A virus-induced transcriptome Schmolke, Mirco; Viemann, Dorothee; Roth, Johannes; Ludwig, Stephan 2009
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Estrogen receptor alpha is a major contributor to estrogen-mediated fetal testis dysgenesis and cryptorchidism Cederroth, Christopher; Schaad, Olivier; Descombes, Patrick; Chambon, Pierre; ... Nef, Serge 2007
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Evidence for transcript networks composed of chimeric RNAs in human cells Djebali, Sarah; Lagarde, Julien; Kapranov, Philipp; Lacroix, Vincent 2012
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EWS-FLI-1 expression triggers a Ewing's sarcoma initiation program in primary human mesenchymal stem cells Riggi, Nicolo; Suva, Mario-Luca; Suva, Domizio; Cironi, Luisa; ... Stamenkovic, Ivan 2008
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Exploiting the glioblastoma peptidome to discover novel tumour-associated antigens for immunotherapy Dutoit Vallotton, Valérie; Herold-Mende, Christel; Hilf, Norbert; Schoor, Oliver; ... Dietrich, Pierre-Yves 2012
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Expression profiles of urbilaterian genes uniquely shared between honey bee and vertebrates Matsui, Toshiaki; Yamamoto, Toshiyuki; Wyder, Stefan; Zdobnov, Evgeny; Kadowaki, Tatsuhiko 2009
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EZH2 is essential for glioblastoma cancer stem cell maintenance Suva, Mario-Luca; Riggi, Nicolo; Janiszewska, Michalina; Radovanovic, Ivan; ... Stamenkovic, Ivan 2009
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From expression QTLs to personalized transcriptomics Montgomery, Stephen; Dermitzakis, Emmanouil 2011
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Functional interactions between sphingolipids and sterols in biological membranes regulating cell physiology Guan, Xue Li; Souza, Cleiton; Pichler, Harald; Dewhurst, Gisele; ... Riezman, Howard 2009
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Gene expression during sex determination reveals a robust female genetic program at the onset of ovarian development Nef, Serge; Schaad, Olivier; Stallings, Nancy R.; Cederroth, Christopher; ... Vassalli, Jean-Dominique 2005
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Gene expression levels are a target of recent natural selection in the human genome Kudaravalli, Sridhar; Veyrieras, Jean-Baptiste; Stranger, Barbara E.; Dermitzakis, Emmanouil; Pritchard, Jonathan K. 2009
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Gene expression profile of Huh-7 cells expressing hepatitis C virus genotype 1b or 3a core proteins Pazienza, Valerio; Clement, Sophie; Pugnale, Paolo; Conzelmann, Stéphanie; ... Negro, Francesco 2009
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Gene expression profiles during beta cell maturation and after IL-1beta exposure reveal important roles of Pdx-1 and Nkx6.1 for IL-1beta sensitivity Nielsen, K; Kruhøffer, M; Orntoft, T; Sparre, T; ... Karlsen, A E 2004
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