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[Bioinformatics analysis of antimicrobial resistance genes and prophages colocalized in human gut metagenomes] Starikova, E V; Prianichnikov, N A; Zdobnov, Evgeny; Govorun, V M 2017
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A depauperate immune repertoire precedes evolution of sociality in bees Barribeau, Seth M; Sadd, Ben M; du Plessis, Louis; Brown, Mark JF; ... Schmid-Hempel, Paul 2015
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A genome-wide survey of human pseudogenes Torrents, David; Suyama, Mikita; Zdobnov, Evgeny; Bork, Peer 2003
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A pseudoknot-compatible universal site is located in the large ribosomal RNA in the peptidyltransferase center Ivanov, V I; Bondarenko, S A; Zdobnov, Evgeny; Beniaminov, A D; ... Ulyanov, N B 1999
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A remarkably stable TipE gene cluster: evolution of insect Para sodium channel auxiliary subunits Li, Jia; Waterhouse, Robert; Zdobnov, Evgeny 2011
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A teratocarcinoma-like human embryonic stem cell (hESC) line and four hESC lines reveal potentially oncogenic genomic changes Hovatta, Outi; Jaconi, Marisa; Tohonen, Virpi; Bena, Frédérique; ... Feki, Anis 2010
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AnoEST: toward A. gambiae functional genomics Kriventseva, Evgenia; Koutsos, Anastasios C; Blass, Claudia; Kafatos, Fotis C; ... Zdobnov, Evgeny 2005
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Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection Cordey, Samuel; Vu Cantero, Diem-Lan; Schibler, Manuel; L'Huillier, Arnaud; ... Kaiser, Laurent 2016
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Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology Cordey, Samuel; Brito, Francisco; Vu Cantero, Diem-Lan; Turin, Lara; ... Kaiser, Laurent 2016
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Bioinformatics: using the molecular biology data Zdobnov, Evgeny; Lopez, Rodrigo; Apweiler, Rolf; Etzold, Thure 2001
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BUSCO applications from quality assessments to gene prediction and phylogenomics Waterhouse, Robert; Seppey, Mathieu; Simao Neto, Felipe; Manni, Mose; ... Zdobnov, Evgeny 2017
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BUSCO: assessing genome assembly and annotation completeness Seppey, Mathieu; Manni, Mose; Zdobnov, Evgeny 2019
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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs Simao Neto, Felipe; Waterhouse, Robert; Ioannidis, Panagiotis; Kriventseva, Evgenia; Zdobnov, Evgeny 2015
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CEGA - a catalog of conserved elements from genomic alignments Dousse, Aline; Junier, Thomas; Zdobnov, Evgeny 2016
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Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report Schibler, Manuel; Vetter, Pauline; Cherpillod, Pascal; Petty, Tom J; ... Kaiser, Laurent 2015
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CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins Kriventseva, Evgenia; Fleischmann, Wolfgang; Zdobnov, Evgeny; Apweiler, Rolf 2001
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Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages Bourque, Guillaume; Zdobnov, Evgeny; Bork, Peer; Pevzner, Pavel A; Tesler, Glenn 2005
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Comparative Genome Analysis Waterhouse, Robert; Kriventseva, Evgenia; Zdobnov, Evgeny 2009
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Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster Zdobnov, Evgeny; von Mering, Christian; Letunic, Ivica; Torrents, David; ... Bork, Peer 2002
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Comparative genomic analysis in the region of a major Plasmodium-refractoriness locus of Anopheles gambiae Thomasova, Dana; Ton, Lucas Q; Copley, Richard R; Zdobnov, Evgeny; ... Collins, Frank H 2002
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Comparative genomics groups phages of negativicutes and classical firmicutes despite different gram-staining properties Rands, Christopher; Brüssow, Harald; Zdobnov, Evgeny 2019
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Comparative Genomics of Insect Immunity Kafatos, Fotis; Waterhouse, Robert; Zdobnov, Evgeny; Christophides, George 2009
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Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study Petty Ii, Thomas John; Cordey, Samuel; Padioleau, Ismael; Docquier, Mylene; ... Kaiser, Laurent 2014
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Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response Cosset, Erika; Petty Ii, Thomas John; Dutoit Vallotton, Valérie; Cordey, Samuel; ... Preynat-Seauve, Olivier 2014
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Computational and transcriptional evidence for microRNAs in the honey bee genome Weaver, D. B.; Anzola, J. M.; Evans, J. D.; Reid, J. G.; ... Elsik, C. G. 2007
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Consistency of genome-based methods in measuring Metazoan evolution Zdobnov, Evgeny; von Mering, Christian; Letunic, Ivica; Bork, Peer 2005
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Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi Waterhouse, Robert; Zdobnov, Evgeny; Kriventseva, Evgenia 2011
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Dampening of arginase 2 expression by microRNA-155 is critical for dendritic cell function Zdobnov, Evgeny; Dunand-Sauthier, Isabelle; Santiago-Raber, Marie-Laure; Carnesecchi, Stéphanie; ... Reith, Walter 2012
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Drug resistance in newly HIV diagnosed individuals: transmission rate, clusters and persistence Yerly Ferrillo, Sabine; Junier, Thomas; Boffi, E.; Gunthard, H. F.; ... Kaiser, Laurent 2008
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E119D Neuraminidase Mutation Conferring Pan-Resistance to Neuraminidase Inhibitors in an A(H1N1)pdm09 Isolate From a Stem-Cell Transplant Recipient L'Huillier, Arnaud; Abed, Yacine; Petty, Tom; Cordey, Samuel; ... Kaiser, Laurent 2015
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Evolution of genes and genomes on the Drosophila phylogeny Drosophila 12 Genomes Consortium 2007
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Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes Waterhouse, R. M.; Kriventseva, E. V.; Meister, Stephan; Xi, Zhiyong; ... Christophides, G. K. 2007
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Experimental evidence for slipped loop DNA, a novel folding type for polynucleotide chain Minyat, E E; Khomyakova, E B; Petrova, M V; Zdobnov, Evgeny; Ivanov, V I 1995
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Expression profiles of urbilaterian genes uniquely shared between honey bee and vertebrates Matsui, Toshiaki; Yamamoto, Toshiyuki; Wyder, Stefan; Zdobnov, Evgeny; Kadowaki, Tatsuhiko 2009
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Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support Stockinger, Heinz; Altenhoff, Adrian M; Arnold, Konstantin; Bairoch, Amos Marc; ... Appel, Ron David 2014
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Finding the missing honey bee genes: lessons learned from a genome upgrade Elsik, Christine G; Worley, Kim C; Waterhouse, Robert; Zdobnov, Evgeny 2014
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Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances Kim, Jaebum; Cunningham, Ryan; James, Brian; Wyder, Stefan; ... Sinha, Saurabh 2010
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Gene Age Predicts the Strength of Purifying Selection Acting on Gene Expression Variation in Humans Popadin, Konstantin; Gutierrez Arcelus, Maria; Lappalainen, Tuuli Emilia; Buil Demur, Alfonso Alberto; ... Antonarakis, Stylianos 2014
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Genome evolution reveals biochemical networks and functional modules von Mering, Christian; Zdobnov, Evgeny; Tsoka, Sophia; Ciccarelli, Francesca D; ... Bork, Peer 2003
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Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface McKenna, Duane D; Scully, Erin D; Pauchet, Yannick; Hoover, Kelli; ... Zdobnov, Evgeny 2016
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Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution Hoy, Marjorie A; Waterhouse, Robert; Wu, Ke; Estep, Alden S; ... Richards, Stephen 2016
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Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders Ioannidis, Panagiotis; Simao Neto, Felipe; Waterhouse, Robert; Manni, Mose; ... Zdobnov, Evgeny 2017
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Have fun, Be useful Zdobnov, Evgeny 2003
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Human pegivirus persistence in the human blood virome after allogeneic haematopoietic stem cell transplantation Vu Cantero, Diem-Lan; Cordey, Samuel; Simonetta, Federico; Brito, Francisco; ... Kaiser, Laurent 2018
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Identification of site-specific adaptations conferring increased neural cell tropism during human enterovirus 71 infection Cordey, Samuel; Petty Ii, Thomas John; Schibler, Manuel; Martinez, Yannick; ... Tapparel, Caroline 2012
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Immunity-related genes and gene families in Anopheles gambiae Christophides, G. K.; Zdobnov, Evgeny; Barillas-Mury, Carolina; Birney, Ewan; ... Kafatos, F. C. 2002
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Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections Ambrosioni Czyrko, Juan; Junier, Thomas; Delhumeau, Cécile; Calmy, Alexandra; ... Yerly Ferrillo, Sabine 2012
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Impact of newly HIV diagnosed individuals on the transmission of drug resistance Yerly Ferrillo, Sabine; Junier, Thomas; Gayet-Ageron, Angèle; El Amari, E. Boffi; ... Kaiser, Laurent 2009
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In silico Analysis Suggests Common Appearance of scaRNAs in Type II Systems and Their Association With Bacterial Virulence Guzina, Jelena; Chen, Wei-Hua; Stankovic, Tamara; Djordjevic, Magdalena; ... Djordjevic, Marko 2018
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Integration of microRNA miR-122 in hepatic circadian gene expression Gatfield, David; Le Martelot, Gwendal; Vejnar, Charles; Gerlach, Daniel; ... Schibler, Ulrich 2009
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