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Nunes, Jose Manuel

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2021

Scientific Articles

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A comment on estimating HLA haplotype frequencies from homozygous individuals

Nunes, Jose Manuel;

2020

Scientific Articles

unige:159357	Binding affinities of 438 hla proteins to complete proteomes of seven pandemic viruses and distributions of strongest and weakest hla peptide binders in populations worldwide	Barquera, Rodrigo; Collen, Evelyn; Di, Da; Buhler, Stéphane; ... Sanchez-Mazas, Alicia
unige:145691	Similar patterns of genetic diversity and linkage disequilibrium in Western chimpanzees (Pan troglodytes verus) and humans indicate highly conserved mechanisms of MHC molecular evolution	Vangenot, Christelle; Nunes, Jose Manuel; Doxiadis, Gaby M.; Poloni, Estella S.; ... Sanchez-Mazas, Alicia

2019

Scientific Articles

unige:156823	Does NGS typing highlight our understanding of HLA population diversity?: Some good reasons to say yes and a few to say be careful	Sanchez-Mazas, Alicia; Nunes, Jose Manuel;
unige:127125	High-resolution HLA phased haplotype frequencies to predict the success of unrelated donor searches and clinical outcome following hematopoietic stem cell transplantation	Buhler, Stéphane; Baldomero, Helen; Ferrari-Lacraz, Sylvie; Nunes, Jose Manuel; ... Villard, Jean

2018

Scientific Articles

unige:102911	Deciphering the fine nucleotide diversity of full HLA class I and class II genes in a well-documented population from sub-Saharan Africa	Goeury, Thomas; Creary, L E; Brunet, Lydie; Galan, M; ... Sanchez-Mazas, Alicia
unige:102837	Genetic history of the African Sahelian populations	Černý, V; Kulichová, I; Poloni, Estella S.; Nunes, Jose Manuel; ... Sanchez-Mazas, Alicia
unige:102912	Mandenka from Senegal: Next Generation Sequencing typings reveal very high frequencies of particular HLA class II alleles and haplotypes	Goeury, Thomas; Creary, L E; Fernandez-Vina, M A; Tiercy, Jean-Marie; ... Sanchez-Mazas, Alicia

2017

Scientific Articles

unige:102914	Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for Immunogenetics	Sanchez-Mazas, Alicia; Nunes, Jose Manuel; Middleton, D; Sauter, J; ... Fleischhauer, K
unige:102915	The HLA-A, -B and -DRB1 polymorphism in a large dataset of South Brazil bone marrow donors from Rio Grande do Sul	Boquett, J A; Nunes, Jose Manuel; Buhler, Stéphane; de Oliveira, M Z; ... Sanchez-Mazas, Alicia
unige:102913	The HLA-B landscape of Africa: Signatures of pathogen-driven selection and molecular identification of candidate alleles to malaria protection	Sanchez-Mazas, Alicia; Černý, Viktor; Di, Da; Buhler, Stéphane; ... Nunes, Jose Manuel

2016

Scientific Articles

unige:84711	HLA class I molecular variation and peptide-binding properties suggest a model of joint divergent asymmetric selection	Buhler, Stéphane; Nunes, Jose Manuel; Sanchez-Mazas, Alicia;
unige:102916	Mapping the HLA diversity of the Iberian Peninsula	Romòn, Iñigo; Montes, Carmen; Ligeiro, Dario; Trindade, Hélder; ... Buhler, Stéphane

2015

Scientific Articles

unige:102918	Correction to: "Forward-in-Time, Spatially Explicit Modeling Software to Simulate Genetic Lineages Under Selection"	Currat, Mathias; Gerbault, Pascale; Di, Da; Nunes, Jose Manuel; Sanchez-Mazas, Alicia
unige:81097	Forward-in-Time, Spatially Explicit Modeling Software to Simulate Genetic Lineages Under Selection	Currat, Mathias; Gerbault, Pascale; Di, Da; Nunes, Jose Manuel; Sanchez-Mazas, Alicia
unige:75493	HLA genetic diversity in Hungarians and Hungarian Gypsies: complementary differentiation patterns and demographic signals revealed by HLA-A, -B and -DRB1 in Central Europe	Inotai, D.; Szilvasi, A.; Benko, S.; Boros-Major, A.; ... Tordai, A.
unige:84712	HLA supertype variation across populations: new insights into the role of natural selection in the evolution of HLA-A and HLA-B polymorphisms	Dos Santos Francisco, Rodrigo; Buhler, Stéphane; Nunes, Jose Manuel; Bitarello, Bárbara Domingues; ... Sanchez-Mazas, Alicia
unige:75494	HLA-A, B and DRB1 genetic heterogeneity in Quebec	Buhler, Stéphane; Nunes, Jose Manuel; Sanchez-Mazas, Alicia; Richard, L.;
unige:102917	HLA-A-B-C-DRB1-DQB1 phased haplotypes in 124 Nigerian families indicate extreme HLA diversity and low linkage disequilibrium in Central-West Africa	Testi, M; Battarra, M; Lucarelli, G; Isgro, A; ... Sanchez-Mazas, Alicia

2014

Scientific Articles

unige:102920	HLA-DRB1 and HLA-DQB1 allele associations in an Albanian patient population with rheumatoid arthritis: correlations with the specific autoantibody markers and inter-population DRB1 allele frequency variability	Prifti-Kurti, Margarita; Nunes, Jose Manuel; Shyti, Erkena; Ylli, Zamira; ... Sulcebe, Genc
unige:33670	NO to obsolete definitions: YES to blanks	Nunes, Jose Manuel; Buhler, Stéphane; Sanchez-Mazas, Alicia;
unige:40246	Resolution of HLA-B44:02:01G, -DRB114:01:01G and -DQB1*03:01:01G reveals a high allelic variability among 12 European populations	Vidan-Jeras, B.; Buhler, Stéphane; Dubois, V.; Grubic, Z.; ... Tiercy, Jean-Marie
unige:38267	The HLA-net GENE[RATE] pipeline for effective HLA data analysis and its application to 145 population samples from Europe and neighbouring areas	Nunes, Jose Manuel; Buhler, Stéphane; Roessli, David; Sanchez-Mazas, Alicia;

2013

Scientific Articles

unige:25791	16th IHIW: Analysis of HLA Population Data, with updated results for 1996 to 2012 workshop data (AHPD project report)	Riccio, Maria Eugenia; Buhler, Stéphane; Nunes, Jose Manuel; Vangenot, Christelle; ... Sanchez-Mazas, Alicia
unige:84696	A New HLA Map of Europe: Regional Genetic Variation and Its Implication for Peopling History, Disease-Association Studies and Tissue Transplantation	Sanchez-Mazas, Alicia; Buhler, Stéphane; Nunes, Jose Manuel;
unige:102922	Haplotype diversity generated by ancient recombination-like events in the MHC of Indian rhesus macaques	Doxiadis, Gaby G M; de Groot, Nanine; Otting, Nel; de Vos-Rouweler, Annemiek J M; ... Bontrop, Ronald E
unige:102921	The distribution of MICA alleles in an Austrian population: evidence for increasing polymorphism	Wenda, Sabine; Faé, Ingrid; Sanchez-Mazas, Alicia; Nunes, Jose Manuel; ... Fischer, Gottfried F

2012

Scientific Articles

unige:21982	Strategies to work with HLA data in human populations for histocompatibility, clinical transplantation, epidemiology and population genetics: HLA-NET methodological recommendations	Sanchez-Mazas, Alicia; Vidan-Jeras, B.; Nunes, Jose Manuel; Fischer, G.; ... Tiercy, Jean-Marie
unige:21955	The Heterogeneous HLA Genetic Makeup of the Swiss Population	Buhler, Stéphane; Nunes, Jose Manuel; Nicoloso, Grazia; Tiercy, Jean-Marie; Sanchez-Mazas, Alicia

2011

Scientific Articles

unige:16925	Allele frequency estimation from ambiguous data : using resampling schema in validating frequency estimates and in selective neutrality testing	Nunes, Jose Manuel; Riccio, Maria Eugenia; Tiercy, Jean-Marie; Sanchez-Mazas, Alicia;
unige:16904	The Austroasiatic Munda Population from India and its Enigmatic Origin: A HLA Diversity Study	Riccio, Maria Eugenia; Nunes, Jose Manuel; Rahal, Melissa; Kervaire, Barbara Nelly; Tiercy, Jean-Marie

2010

Scientific Articles

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Analysis of the HLA population data (AHPD) submitted to the 15th International Histocompatibility/Immunogenetics Workshop by using the Gene[rate] computer tools accommodating ambiguous data (AHPD project report)

Nunes, Jose Manuel; Riccio, Maria Eugenia; Buhler, Stéphane; Di, Da; ... Sanchez-Mazas, Alicia

2007

Scientific Articles

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Tools for analysing ambiguous HLA data

Nunes, Jose Manuel;

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