Dermitzakis, Emmanouil

 
 
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2018

Scientific Articles

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Age-dependent changes in mean and variance of gene expression across tissues in a twin cohortVinuela Rodriguez, Ana; Brown, Andrew Anand; Buil Demur, Alfonso Alberto; Tsai, Pei-Chien; ... Small, Kerrin S
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Angiogenin and osteoprotegerin are type II muscle specific myokines protecting pancreatic beta-cells against proinflammatory cytokinesRutti Roch, Sabine; Dusaulcy, Rodolphe; Hansen, Jakob S.; Howald, Cédric; ... Bouzakri, Karim
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Comprehensive evaluation of coding region point mutations in microsatellite‐unstable colorectal cancerKondelin, Johanna; Salokas, Kari; Saarinen, Lilli; Ovaska, Kristian; ... Aaltonen, Lauri A
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Contribution of allelic imbalance to colorectal cancerPalin, Kimmo; Pitkänen, Esa; Turunen, Mikko; Sahu, Biswajyoti; ... Aaltonen, Lauri A.
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Deciphering Cell Lineage Specification during Male Sex Determination with Single-Cell RNA SequencingStevant, Isabelle; Neirijnck, Yasmine; Borel, Christelle; Escoffier Breancon, Jessica; ... Nef, Serge
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MRPL53, a new candidate gene for orofacial clefting, identified using an eQTL approachMasotti, C.; Brito, L.A.; Nica, A.C.; Ludwig, K.U.; ... Passos-Bueno, M.R.
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Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal musclePerrin, Laurent; Loizides-Mangold, Ursula; Chanon, Stéphanie; Gobet, Cédric; ... Dibner, Charna
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Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variationGamazon, Eric R.; Segrè, Ayellet V.; van de Bunt, Martijn; Wen, Xiaoquan; ... Ardlie, Kristin G.

Thesis supervisions

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Dissecting the variability of molecular phenotypes in population cell lines and single cellsGarieri, Marco;
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Monitoring gonadal somatic cell differentiation during sex determination using single-cell RNA sequencingStevant, Isabelle;

2017

Scientific Articles

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A complete tool set for molecular QTL discovery and analysisDelaneau, Olivier; Ongen, Halit; Brown, Andrew Anand; Fort, Alexandre; ... Dermitzakis, Emmanouil
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Chromosomal contacts connect loci associated with autism, BMI and head circumference phenotypesLoviglio, M N; Leleu, M; Männik, K; Passeggeri, M; ... Reymond, A
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Co-expression networks reveal the tissue-specific regulation of transcription and splicingSaha, Ashis; Kim, Yungil; Gewirtz, Ariel D.H.; Jo, Brian; ... Battle, Alexis
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Dynamic landscape and regulation of RNA editing in mammalsTan, Meng How; Li, Qin; Shanmugam, Raghuvaran; Piskol, Robert; ... Howald, Cédric
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Estimating the causal tissues for complex traits and diseasesOngen, Halit; Brown, Andrew Anand; Delaneau, Olivier; Panousis, Nikolaos; ... Dermitzakis, Emmanouil
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Genetic correlations reveal the shared genetic architecture of transcription in human peripheral bloodLukowski, Samuel W.; Lloyd-Jones, Luke R.; Holloway, Alexander; Kirsten, Holger; ... Powell, Joseph E.
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Genetic effects on gene expression across human tissuesBrown, Andrew Anand; Delaneau, Olivier; Dermitzakis, Emmanouil; Howald, Cédric; ... Panousis, Nikolaos
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Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell typesEcker, Simone; Chen, Lu; Pancaldi, Vera; Bagger, Frederik O.; ... Paul, Dirk S.
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Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysisYang, Fan; Wang, Jiebiao; Dermitzakis, Emmanouil; Pierce, Brandon L.; Chen, Lin S.
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Inference and quantification of peptidoforms in large sample cohorts by SWATH-MSRosenberger, George; Liu, Yansheng; Röst, Hannes L; Ludwig, Christina; ... Aebersold, Ruedi
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Integrative genomic analysis implicates limited peripheral adipose storage capacity in the pathogenesis of human insulin resistanceLotta, Luca A; Gulati, Pawan; Day, Felix R; Payne, Felicity; ... Scott, Robert A
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Mapping eQTLs with RNA-seq reveals novel susceptibility genes, non-coding RNAs and alternative-splicing events in systemic lupus erythematosusOdhams, Christopher A.; Cortini, Andrea; Chen, Lingyan; Roberts, Amy L.; ... Cunninghame Graham, Deborah S.
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MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasetsFort, Alexandre; Panousis, Nikolaos; Garieri, Marco; Antonarakis, Stylianos; ... Delaneau, Olivier
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Molecular-Subtype-Specific Biomarkers Improve Prediction of Prognosis in Colorectal CancerBramsen, Jesper Bertram; Rasmussen, Mads Heilskov; Ongen, Halit; Mattesen, Trine Block; ... Andersen, Claus Lindbjerg
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Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissuesBrown, Andrew Anand; Vinuela Rodriguez, Ana; Delaneau, Olivier; Spector, Tim D; ... Dermitzakis, Emmanouil
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The effect of genetic variation on promoter usage and enhancer activityGarieri, Marco; Delaneau, Olivier; Santoni, Federico; Fish, Richard; ... Fort, Alexandre
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The genomic landscape of human cellular circadian variation points to a novel role for the signalosomeGaspar, Ludmila; Howald, Cédric; Popadin, Konstantin; Maier, Bert; ... Brown, Steven A
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The impact of rare variation on gene expression across tissuesLi, Xin; Kim, Yungil; Tsang, Emily K.; Davis, Joe R.; ... Panousis, Nikolaos
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The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progressionLiu, Ning Qing; ter Huurne, Menno; Nguyen, Luan N.; Peng, Tianran; ... Stunnenberg, Hendrik G.
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Time-dependent genetic effects on gene expression implicate aging processesBryois, Julien; Buil Demur, Alfonso Alberto; Ferreira, Pedro; Panousis, Nikolaos; ... Dermitzakis, Emmanouil

Thesis supervisions

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Omics profiling to dissect complex diseasePanousis, Nikolaos;

2015

Scientific Articles

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Alternative Splicing QTLs in European and African PopulationsOngen, Halit; Dermitzakis, Emmanouil;
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Assessing allele-specific expression across multiple tissues from RNA-seq read dataPirinen, Matti; Lappalainen, Tuuli Emilia; Zaitlen, Noah A; Dermitzakis, Emmanouil; ... Rivas, Manuel A
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Biased allelic expression in human primary fibroblast single cellsBorel, Christelle; Ferreira Marinheiro, Pedro; Santoni, Federico; Delaneau, Olivier; ... Antonarakis, Stylianos
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Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twinsBuil Demur, Alfonso Alberto; Brown, Andrew Anand; Lappalainen, Tuuli Emilia; Viñuela, Ana; ... Dermitzakis, Emmanouil
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Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptomeRivas, Manuel A; Pirinen, Matti; Conrad, Donald F; Lek, Monkol; ... Antonarakis, Stylianos
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Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humansDermitzakis, Emmanouil;
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Human genomics. The human transcriptome across tissues and individualsMelé, Marta; Ferreira, Pedro G; Reverter, Ferran; DeLuca, David S; ... Guigó, Roderic
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Impaired Cell Cycle Regulation in a Natural Equine Model of AsthmaPacholewska, Alicja; Jagannathan, Vidhya; Drögemüller, Michaela; Klukowska-Rötzler, Jolanta; ... Gerber, Vincent
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Integrated analysis of mRNA and miRNA expression in response to interleukin-6 in hepatocytesLukowski, Samuel; Fish, Richard; Martin-Levilain, Juliette; Gonelle-Gispert, Carmen; ... Neerman Arbez, Marguerite
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Integrated analysis of mRNA and miRNA expression in response to interleukin-6 in hepatocytesLukowski, Samuel; Fish, Richard; Martin-Levilain, Juliette; Gonelle-Gispert, Carmen; ... Neerman Arbez, Marguerite
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