Highlights
Ruch, Patrick
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Elements: 51
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2021
Scientific Articles
2020
Scientific Articles
unige:157932![]() ![]() | UPCLASS: a deep learning-based classifier for UniProtKB entry publications | Teodoro, Douglas; Knafou, Julien David Marc; Naderi, Nona; Pasche, Emilie; ... Ruch, Patrick |
Proceedings Chapters
unige:159580![]() ![]() | An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents | He, Jiayuan; Quoc Nguyen, Dat; Akhondi, Saber A.; Druckenbrodt, Christian; ... Verspoor, Karin |
unige:159575![]() ![]() | BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models | Knafou, Julien David Marc; Naderi, Nona; Copara Zea, Jenny Linet; Teodoro, Douglas; Ruch, Patrick |
unige:159574![]() ![]() | Contextualized French Language Models for Biomedical Named Entity Recognition | Copara Zea, Jenny Linet; Knafou, Julien David Marc; Naderi, Nona; Moro, Claudia; ... Teodoro, Douglas |
unige:159578![]() ![]() | Named entity recognition in chemical patents using ensemble of contextual language models | Copara Zea, Jenny Linet; Naderi, Nona; Knafou, Julien David Marc; Ruch, Patrick; Teodoro, Douglas |
2019
Proceedings Chapters
unige:159642![]() ![]() | A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts | Naderi, Nona; Gobeill, Julien; Teodoro, Douglas; Pasche, Emilie; Ruch, Patrick |
unige:159573![]() ![]() | A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts | van Rijen, Paul; Teodoro, Douglas; Naderi, Nona; Mottin, Luc; ... Ruch, Patrick |
unige:159644![]() ![]() | SIB Text Mining at TREC 2019 Deep Learning Track: Working Note | Knafou, Julien David Marc; Jeffryes, Matt; Mottin, Luc; Teodoro, Douglas; Ruch, Patrick |
Thesis supervisions
unige:118269![]() ![]() | Assistance à la curation de publications scientifiques par des méthodes de triage et d'annotation automatiques | Mottin, Luc; |
2017
Scientific Articles
2016
Scientific Articles
unige:85863![]() ![]() | neXtA5: accelerating annotation of articles via automated approaches in neXtProt | Mottin, Luc; Gobeill, Julien; Pasche, Emilie; Michel, Pierre-André Albert; ... Ruch, Patrick |
2015
Scientific Articles
unige:75371![]() ![]() | Deep Question Answering for protein annotation | Gobeill, Julien; Gaudinat, Arnaud; Pasche, Emilie; Vishnyakova, Dina; ... Ruch, Patrick |
2014
Scientific Articles
unige:34830![]() ![]() | Development and tuning of an original search engine for patent libraries in medicinal chemistry | Pasche, Emilie; Gobeill, Julien; Kreim, Olivier; Oezdemir-Zaech, Fatma; ... Ruch, Patrick |
Thesis supervisions
unige:46568![]() ![]() | Text mining strategies to support literature-based biocuration | Vishnyakova, Dina; |
2013
Scientific Articles
Proceedings Chapters
unige:45266![]() ![]() | ToxiCat: Hybrid Named Entity Recognition services to support curation of the Comparative Toxicogenomic Database | Vishnyakova, Dina; Gobeill, Julien; Pasche, Emilie; Ruch, Patrick; |
Thesis supervisions
unige:27731![]() ![]() | Managing biomedical knowledge: computer-assisted knowledge acquisition and authoring in highly specialized domains | Pasche, Emilie; |
2012
Scientific Articles
Thesis supervisions
2011
Scientific Articles
unige:21588![]() ![]() | Interoperability driven integration of biomedical data sources | Teodoro, Douglas; Choquet, Rémy; Schober, Daniel; Mels, Giovanni; ... Lovis, Christian |
unige:28899![]() ![]() | KART, a knowledge authoring and refinement tool for clinical guidelines development | Pasche, Emilie; Teodoro, Douglas; Gobeill, Julien; Vishnyakova, Dina; ... Lovis, Christian |
unige:21586![]() ![]() | Using multimodal mining to drive clinical guidelines development | Pasche, Emilie; Gobeill, Julien; Teodoro, Douglas; Vishnyakova, Dina; ... Lovis, Christian |
Présentations / Interventions
unige:159571![]() ![]() | A cross-site antimicrobial resistance surveillance system using semantic web technologies | Teodoro, Douglas; Pasche, Emilie; Vishnyakova, Dina; De Vloed, Boris; ... Lovis, Christian |
2009
Scientific Articles
Thesis supervisions
2008
Scientific Articles
unige:3404![]() ![]() | A bio-medical informatics perspective on human factors. Findings from the Yearbook 2008 Section on Human Factors | Ruch, Patrick; |
unige:1267![]() ![]() | Automatic medical encoding with SNOMED categories | Ruch, Patrick; Gobeill, Julien; Lovis, Christian; Geissbuhler, Antoine; |
unige:2726![]() ![]() | From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding | Ruch, Patrick; Gobeill, Julien; Tbahriti, Imad; Geissbuhler, Antoine; |
unige:1065![]() ![]() | Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction | Gobeill, Julien; Tbahriti, Imad; Ehrler, Frédéric; Mottaz, Anais; ... Ruch, Patrick |
unige:2729![]() ![]() | Introducing meta-services for biomedical information extraction | Leitner, Florian; Krallinger, Martin; Johnson, Calvin A.; Saetre, Rune; ... Lau, William W. |
unige:2727![]() ![]() | Mapping proteins to disease terminologies: from UniProt to MeSH | Mottaz, Anais; Yip Sonderegger, Yum Lina; Ruch, Patrick; Veuthey, Anne-Lise; |