2019

Thesis supervisions

unige:118269

Assistance à la curation de publications scientifiques par des méthodes de triage et d’annotation automatiques

Mottin, Luc;

2017

Scientific Articles

unige:102127

Triage by ranking to support the curation of protein interactions

Mottin, Luc; Pasche, Emilie; Gobeill, Julien; Rech De Laval, Valentine; ... Ruch, Patrick

2016

Scientific Articles

unige:85863

neXtA5: accelerating annotation of articles via automated approaches in neXtProt

Mottin, Luc; Gobeill, Julien; Pasche, Emilie; Michel, Pierre-André Albert; ... Ruch, Patrick

2015

Scientific Articles

unige:75371

Deep Question Answering for protein annotation

Gobeill, Julien; Gaudinat, Arnaud; Pasche, Emilie; Vishnyakova, Dina; ... Ruch, Patrick

2014

Scientific Articles

unige:34830

Development and tuning of an original search engine for patent libraries in medicinal chemistry

Pasche, Emilie; Gobeill, Julien; Kreim, Olivier; Oezdemir-Zaech, Fatma; ... Ruch, Patrick

Thesis supervisions

unige:46568

Text mining strategies to support literature-based biocuration

Vishnyakova, Dina;

2013

Scientific Articles

unige:28707	Assisted knowledge discovery for the maintenance of clinical guidelines	Pasche, Emilie; Ruch, Patrick; Teodoro, Douglas Henrique; Csaki Huttner, Angela; ... Lovis, Christian
unige:137062	Der Nutzen der Schweizer Teilnahme im europäischen Projekt epSOS	Perrin Franck, Caroline; Spahni, Stéphane; Wyss, Stefan; Geissbuhler, Antoine; ... Ruch, Patrick
unige:43754	Khresmoi - multilingual semantic search of medical text and images	Aswani, Niraj; Garcia Seco De Herrera, Alba; Gaudinat, Arnaud; Gobeill, Julien; ... Vishnyakova, Dina
unige:33308	Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases	Gobeill, Julien; Pasche, Emilie; Vishnyakova, Dina; Ruch, Patrick;
unige:32836	Use of controlled vocabularies to improve biomedical information retrieval tasks	Pasche, Emilie; Gobeill, Julien; Vishnyakova, Dina; Ruch, Patrick; Lovis, Christian
unige:32859	Utilization of ontology look-up services in information retrieval for biomedical literature	Vishnyakova, Dina; Pasche, Emilie; Lovis, Christian; Ruch, Patrick;

Proceedings Chapters

unige:45266

ToxiCat: Hybrid Named Entity Recognition services to support curation of the Comparative Toxicogenomic Database

Vishnyakova, Dina; Gobeill, Julien; Pasche, Emilie; Ruch, Patrick;

Thesis supervisions

unige:27731

Managing biomedical knowledge: computer-assisted knowledge acquisition and authoring in highly specialized domains

Pasche, Emilie;

2012

Scientific Articles

unige:21578	A user-friendly tool for medical-related patent retrieval	Pasche, Emilie; Gobeill, Julien; Teodoro, Douglas Henrique; Gaudinat, Arnaud; ... Ruch, Patrick
unige:28900	An advanced search engine for patent analytics in medicinal chemistry	Pasche, Emilie; Gobeill, Julien; Teodoro, Douglas Henrique; Gaudinat, Arnaud; ... Ruch, Patrick
unige:29128	Assister la création de guides de bonnes pratiques par des techniques de recherche d'information	Pasche, Emilie; Gobeill, Julien; Teodoro, Douglas Henrique; Vishnyakova, Dina; ... Lovis, Christian
unige:21501	Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation	Teodoro, Douglas Henrique; Pasche, Emilie; Gobeill, Julien; Emonet, Stéphane; ... Lovis, Christian
unige:32224	Classification and prioritization of biomedical literature for the comparative toxicogenomics database	Vishnyakova, Dina; Pasche, Emilie; Gobeill, Julien; Gaudinat, Arnaud; ... Ruch, Patrick
unige:29130	Development of a text search engine for medicinal chemistry patents	Pasche, Emilie; Gobeill, Julien; Oezdemir-Zaech, Fatma; Vachon, Thérèse; ... Ruch, Patrick
unige:21579	Pathogens and gene product normalization in the biomedical literature	Vishnyakova, Dina; Pasche, Emilie; Teodoro, Douglas Henrique; Lovis, Christian; Ruch, Patrick
unige:31472	PEACE: Personal Enhanced Acquisition for Citizen's Environment	Issom, David-Zacharie; Lovis, Christian; Ruch, Patrick;
unige:32099	Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database	Vishnyakova, Dina; Pasche, Emilie; Ruch, Patrick;

Thesis supervisions

unige:23962	Data integration and trend analysis for surveillance of antimicrobial resistance	Teodoro, Douglas Henrique;
unige:30032	Modèles automatiques de questions / réponses pour les sciences biomédicales	Gobeill, Julien;

2011

Scientific Articles

unige:21588	Interoperability driven integration of biomedical data sources	Teodoro, Douglas Henrique; Choquet, Rémy; Schober, Daniel; Mels, Giovanni; ... Lovis, Christian
unige:28899	KART, a knowledge authoring and refinement tool for clinical guidelines development	Pasche, Emilie; Teodoro, Douglas Henrique; Gobeill, Julien; Vishnyakova, Dina; ... Lovis, Christian
unige:21586	Using multimodal mining to drive clinical guidelines development	Pasche, Emilie; Gobeill, Julien; Teodoro, Douglas Henrique; Vishnyakova, Dina; ... Lovis, Christian

2009

Scientific Articles

unige:28897	Automatic medical knowledge acquisition using question-answering	Pasche, Emilie; Teodoro, Douglas Henrique; Gobeill, Julien; Ruch, Patrick; Lovis, Christian
unige:28898	QA-driven guidelines generation for bacteriotherapy	Pasche, Emilie; Teodoro, Douglas Henrique; Gobeill, Julien; Ruch, Patrick; Lovis, Christian

Thesis supervisions

unige:1695	Modèles vectoriels et bibliométriques pour la recherche d'information et la détection de nouveauté appliqués à la protéomique	Tbahriti, Imad;
unige:12936	Modular text mining for protein-protein interactions extraction	Ehrler, Frédéric;

2008

Scientific Articles

unige:3404	A bio-medical informatics perspective on human factors. Findings from the Yearbook 2008 Section on Human Factors	Ruch, Patrick;
unige:1267	Automatic medical encoding with SNOMED categories	Ruch, Patrick; Gobeill, Julien; Lovis, Christian; Geissbuhler, Antoine;
unige:2726	From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding	Ruch, Patrick; Gobeill, Julien; Tbahriti, Imad; Geissbuhler, Antoine;
unige:1065	Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction	Gobeill, Julien; Tbahriti, Imad; Ehrler, Frédéric; Mottaz, Anais; ... Ruch, Patrick
unige:2729	Introducing meta-services for biomedical information extraction	Leitner, Florian; Krallinger, Martin; Johnson, Calvin A.; Saetre, Rune; ... Lau, William W.
unige:2727	Mapping proteins to disease terminologies: from UniProt to MeSH	Mottaz, Anais; Yip Sonderegger, Yum Lina; Ruch, Patrick; Veuthey, Anne-Lise;
unige:2728	Overview of BioCreative II gene normalization	Morgan, Alexander A.; Lu, Zhiyong; Sun, Chengjie; Liu, Heng-hui; ... Hakenberg, Jörg