Highlights
Ruch, Patrick
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2021
Scientific Articles
2020
Scientific Articles
 | UPCLASS: a deep learning-based classifier for UniProtKB entry publications | Teodoro, Douglas; Knafou, Julien David Marc; Naderi, Nona; Pasche, Emilie; ... Ruch, Patrick |
Proceedings Chapters
| An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents | He, Jiayuan; Quoc Nguyen, Dat; Akhondi, Saber A.; Druckenbrodt, Christian; ... Verspoor, Karin |
| BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models | Knafou, Julien David Marc; Naderi, Nona; Copara Zea, Jenny Linet; Teodoro, Douglas; Ruch, Patrick |
| Contextualized French Language Models for Biomedical Named Entity Recognition | Copara Zea, Jenny Linet; Knafou, Julien David Marc; Naderi, Nona; Moro, Claudia; ... Teodoro, Douglas |
| Named entity recognition in chemical patents using ensemble of contextual language models | Copara Zea, Jenny Linet; Naderi, Nona; Knafou, Julien David Marc; Ruch, Patrick; Teodoro, Douglas |
2019
Proceedings Chapters
| A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts | Naderi, Nona; Gobeill, Julien; Teodoro, Douglas; Pasche, Emilie; Ruch, Patrick |
| A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts | van Rijen, Paul; Teodoro, Douglas; Naderi, Nona; Mottin, Luc; ... Ruch, Patrick |
| SIB Text Mining at TREC 2019 Deep Learning Track: Working Note | Knafou, Julien David Marc; Jeffryes, Matt; Mottin, Luc; Teodoro, Douglas; Ruch, Patrick |
Thesis supervisions
| Assistance à la curation de publications scientifiques par des méthodes de triage et d'annotation automatiques | Mottin, Luc; |
2017
Scientific Articles
2016
Scientific Articles
| neXtA5: accelerating annotation of articles via automated approaches in neXtProt | Mottin, Luc; Gobeill, Julien; Pasche, Emilie; Michel, Pierre-André Albert; ... Ruch, Patrick |
2015
Scientific Articles
| Deep Question Answering for protein annotation | Gobeill, Julien; Gaudinat, Arnaud; Pasche, Emilie; Vishnyakova, Dina; ... Ruch, Patrick |
2014
Scientific Articles
| Development and tuning of an original search engine for patent libraries in medicinal chemistry | Pasche, Emilie; Gobeill, Julien; Kreim, Olivier; Oezdemir-Zaech, Fatma; ... Ruch, Patrick |
Thesis supervisions
| Text mining strategies to support literature-based biocuration | Vishnyakova, Dina; |
2013
Scientific Articles
Proceedings Chapters
| ToxiCat: Hybrid Named Entity Recognition services to support curation of the Comparative Toxicogenomic Database | Vishnyakova, Dina; Gobeill, Julien; Pasche, Emilie; Ruch, Patrick; |
Thesis supervisions
| Managing biomedical knowledge: computer-assisted knowledge acquisition and authoring in highly specialized domains | Pasche, Emilie; |
2012
Scientific Articles
Thesis supervisions
| Data integration and trend analysis for surveillance of antimicrobial resistance | Teodoro, Douglas; |
| Modèles automatiques de questions / réponses pour les sciences biomédicales | Gobeill, Julien; |
2011
Scientific Articles
Présentations / Interventions
| A cross-site antimicrobial resistance surveillance system using semantic web technologies | Teodoro, Douglas; Pasche, Emilie; Vishnyakova, Dina; De Vloed, Boris; ... Lovis, Christian |
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