In clinical gait analysis, measurement errors impede the reliability and repeatability of the measurements. This extrinsic variability can potentially mislead the clinical interpretation of the analysis and should thus be minimised. Skin marker misplacement has been identified as the largest source of extrinsic variability between measurements. The goal of this study was to test whether the fusion of motion capture and 3D medical imaging could reduce extrinsic variability due to skin marker misplacement. The fusion method consists in using anatomical landmarks identified with 3D medical imaging to correct marker misplacements. To assess the reduction of variability accountable to the fusion method, skin marker misplacements were voluntarily introduced in the measurement of the pelvis and hip kinematics during gait for two patients scheduled for unilateral hip arthroplasty and two patients that underwent unilateral hip arthroplasty. The root mean square deviation was reduced by -78 ± 15% and the range of variability by -80 ± 16% for the pelvis and hip kinematics in average. These results showed that the fusion method could significantly reduce the extrinsic variability due to skin marker misplacement and thus increase the reliability and repeatability of motion capture measurements. However, the identification of anatomical landmarks via medical imaging is a new source of extrinsic variability that should be assessed before considering the fusion method for clinical applications.